Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m39/peak-motifs_oligos_7nt_mkv5_m39.tf
		file1	1	11	2015
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m39 MA0608.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 Creb3l2 0.802 0.535 11 9 8 12 0.6667 0.7273 0.8889 D 3
oligos_7nt_mkv5_m39 MA1099.2 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 HES1 0.786 0.484 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m39 MA1474.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 CREB3L4 0.750 0.482 11 12 9 14 0.6429 0.8182 0.7500 D 2
oligos_7nt_mkv5_m39 MA0006.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 Ahr::Arnt 0.883 0.482 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_7nt_mkv5_m39 MA0839.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 CREB3L1 0.721 0.481 11 14 10 15 0.6667 0.9091 0.7143 D 1
oligos_7nt_mkv5_m39 MA1466.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 ATF6 0.710 0.473 11 14 10 15 0.6667 0.9091 0.7143 R 1
oligos_7nt_mkv5_m39 MA0746.2 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 SP3 0.759 0.455 11 13 9 15 0.6000 0.8182 0.6923 D 2
oligos_7nt_mkv5_m39 MA0649.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 HEY2 0.731 0.450 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_7nt_mkv5_m39 MA0259.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 ARNT::HIF1A 0.761 0.444 11 8 7 12 0.5833 0.6364 0.8750 R 4
oligos_7nt_mkv5_m39 MA0004.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 Arnt 0.813 0.443 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_7nt_mkv5_m39 MA1512.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 KLF11 0.757 0.432 11 11 8 14 0.5714 0.7273 0.7273 D 3
oligos_7nt_mkv5_m39 MA0616.2 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 HES2 0.702 0.432 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m39 MA1546.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 PAX3(var.2) 0.720 0.424 11 16 10 17 0.5882 0.9091 0.6250 D 1
oligos_7nt_mkv5_m39 MA0741.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 KLF16 0.737 0.421 11 11 8 14 0.5714 0.7273 0.7273 D 3
oligos_7nt_mkv5_m39 MA0622.1 oligos_7nt_mkv5_m39oligos_7nt_mkv5_m39 Mlxip 0.702 0.410 11 8 7 12 0.5833 0.6364 0.8750 D 4 
 Host name	pedagogix
 Job started	2020-04-14.155451
 Job done	2020-04-14.155503
 Seconds	1.38
	user	1.38
	system	0.2
	cuser	8.77
;	csystem	0.83