One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m4/peak-motifs_oligos_7nt_mkv5_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m4/peak-motifs_oligos_7nt_mkv5_m4_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m4_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m4_shift0 (oligos_7nt_mkv5_m4oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4 (oligos_7nt_mkv5_m4oligos_7nt_mkv5_m4); m=0 (reference); ncol1=11; shift=0; ncol=17; ssCGCaGCGss------ ; Alignment reference a 421 367 0 0 13 1653 14 0 0 314 331 0 0 0 0 0 0 c 1160 800 2725 0 2608 536 40 2725 0 1336 913 0 0 0 0 0 0 g 810 1282 0 2725 34 536 2657 0 2725 743 1169 0 0 0 0 0 0 t 334 276 0 0 70 0 14 0 0 332 312 0 0 0 0 0 0

MA0697.1_rc_shift1 (ZIC3_rc)
; oligos_7nt_mkv5_m4 versus MA0697.1_rc (ZIC3_rc); m=1/4; ncol2=15; w=10; offset=1; strand=R; shift=1; score=0.482125; -dCrCaGCRGGGGGTc- ; cor=; Ncor= a 0 53.0 23.0 74.0 3.0 163.0 29.0 2.0 61.0 0.0 0.0 19.0 7.0 4.0 0.0 69.0 0 c 0 13.0 214.0 13.0 225.0 53.0 6.0 217.0 0.0 0.0 0.0 0.0 3.0 0.0 43.0 163.0 0 g 0 79.0 2.0 89.0 0.0 26.0 178.0 5.0 142.0 206.0 209.0 188.0 204.0 203.0 32.0 50.0 0 t 0 56.0 3.0 24.0 3.0 18.0 4.0 22.0 0.0 0.0 0.0 22.0 7.0 7.0 163.0 20.0 0

MA1584.1_rc_shift1 (ZIC5_rc)
; oligos_7nt_mkv5_m4 versus MA1584.1_rc (ZIC5_rc); m=2/4; ncol2=16; w=10; offset=1; strand=R; shift=1; score=0.447253; -kCrCaGCGGGGGGTck ; cor=; Ncor= a 0 5356.0 2756.0 10267.0 2.0 18007.0 5843.0 23.0 3577.0 2.0 1.0 328.0 57.0 17.0 0.0 5687.0 3106.0 c 0 792.0 19961.0 1725.0 21153.0 3252.0 235.0 20412.0 0.0 2.0 0.0 470.0 58.0 0.0 2765.0 17329.0 5212.0 g 0 11606.0 1733.0 9445.0 8.0 3844.0 19607.0 21.0 17685.0 21235.0 21263.0 20221.0 21163.0 21201.0 2320.0 3318.0 6877.0 t 0 8073.0 52.0 5255.0 251.0 2536.0 2.0 2110.0 10.0 67.0 5.0 1311.0 147.0 250.0 19266.0 555.0 6068.0

MA0696.1_rc_shift2 (ZIC1_rc)
; oligos_7nt_mkv5_m4 versus MA0696.1_rc (ZIC1_rc); m=3/4; ncol2=14; w=9; offset=2; strand=R; shift=2; score=0.411649; --CrCAGCrGGGGGTc- ; cor=; Ncor= a 0 0 2725.0 16190.0 1.0 27084.0 6735.0 14.0 10313.0 14.0 7.0 927.0 281.0 125.0 23.0 8960.0 0 c 0 0 34431.0 1690.0 34649.0 5531.0 439.0 31995.0 0.0 10.0 4.0 327.0 204.0 58.0 7408.0 25702.0 0 g 0 0 520.0 7693.0 24.0 1757.0 27426.0 45.0 18412.0 29532.0 29399.0 25527.0 29217.0 28949.0 2660.0 3934.0 0 t 0 0 35.0 3121.0 73.0 1215.0 23.0 2156.0 22.0 185.0 0.0 2606.0 1264.0 836.0 22722.0 1113.0 0

MA0006.1_rc_shift0 (Ahr::Arnt_rc)
; oligos_7nt_mkv5_m4 versus MA0006.1_rc (Ahr::Arnt_rc); m=4/4; ncol2=6; w=6; offset=0; strand=R; shift=0; score=0.40912; CACGCr----------- ; cor=; Ncor= a 0.0 24.0 1.0 1.0 1.0 11.0 0 0 0 0 0 0 0 0 0 0 0 c 24.0 0.0 23.0 0.0 23.0 2.0 0 0 0 0 0 0 0 0 0 0 0 g 0.0 0.0 0.0 23.0 0.0 8.0 0 0 0 0 0 0 0 0 0 0 0 t 0.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m4_shift0 (oligos_7nt_mkv5_m4oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m4 (oligos_7nt_mkv5_m4oligos_7nt_mkv5_m4); m=0 (reference); ncol1=11; shift=0; ncol=17; ssCGCaGCGss------ ; Alignment reference a 421 367 0 0 13 1653 14 0 0 314 331 0 0 0 0 0 0 c 1160 800 2725 0 2608 536 40 2725 0 1336 913 0 0 0 0 0 0 g 810 1282 0 2725 34 536 2657 0 2725 743 1169 0 0 0 0 0 0 t 334 276 0 0 70 0 14 0 0 332 312 0 0 0 0 0 0
MA0697.1_rc_shift1 (ZIC3_rc)				; oligos_7nt_mkv5_m4 versus MA0697.1_rc (ZIC3_rc); m=1/4; ncol2=15; w=10; offset=1; strand=R; shift=1; score=0.482125; -dCrCaGCRGGGGGTc- ; cor=; Ncor= a 0 53.0 23.0 74.0 3.0 163.0 29.0 2.0 61.0 0.0 0.0 19.0 7.0 4.0 0.0 69.0 0 c 0 13.0 214.0 13.0 225.0 53.0 6.0 217.0 0.0 0.0 0.0 0.0 3.0 0.0 43.0 163.0 0 g 0 79.0 2.0 89.0 0.0 26.0 178.0 5.0 142.0 206.0 209.0 188.0 204.0 203.0 32.0 50.0 0 t 0 56.0 3.0 24.0 3.0 18.0 4.0 22.0 0.0 0.0 0.0 22.0 7.0 7.0 163.0 20.0 0
MA1584.1_rc_shift1 (ZIC5_rc)				; oligos_7nt_mkv5_m4 versus MA1584.1_rc (ZIC5_rc); m=2/4; ncol2=16; w=10; offset=1; strand=R; shift=1; score=0.447253; -kCrCaGCGGGGGGTck ; cor=; Ncor= a 0 5356.0 2756.0 10267.0 2.0 18007.0 5843.0 23.0 3577.0 2.0 1.0 328.0 57.0 17.0 0.0 5687.0 3106.0 c 0 792.0 19961.0 1725.0 21153.0 3252.0 235.0 20412.0 0.0 2.0 0.0 470.0 58.0 0.0 2765.0 17329.0 5212.0 g 0 11606.0 1733.0 9445.0 8.0 3844.0 19607.0 21.0 17685.0 21235.0 21263.0 20221.0 21163.0 21201.0 2320.0 3318.0 6877.0 t 0 8073.0 52.0 5255.0 251.0 2536.0 2.0 2110.0 10.0 67.0 5.0 1311.0 147.0 250.0 19266.0 555.0 6068.0
MA0696.1_rc_shift2 (ZIC1_rc)				; oligos_7nt_mkv5_m4 versus MA0696.1_rc (ZIC1_rc); m=3/4; ncol2=14; w=9; offset=2; strand=R; shift=2; score=0.411649; --CrCAGCrGGGGGTc- ; cor=; Ncor= a 0 0 2725.0 16190.0 1.0 27084.0 6735.0 14.0 10313.0 14.0 7.0 927.0 281.0 125.0 23.0 8960.0 0 c 0 0 34431.0 1690.0 34649.0 5531.0 439.0 31995.0 0.0 10.0 4.0 327.0 204.0 58.0 7408.0 25702.0 0 g 0 0 520.0 7693.0 24.0 1757.0 27426.0 45.0 18412.0 29532.0 29399.0 25527.0 29217.0 28949.0 2660.0 3934.0 0 t 0 0 35.0 3121.0 73.0 1215.0 23.0 2156.0 22.0 185.0 0.0 2606.0 1264.0 836.0 22722.0 1113.0 0
MA0006.1_rc_shift0 (Ahr::Arnt_rc)				; oligos_7nt_mkv5_m4 versus MA0006.1_rc (Ahr::Arnt_rc); m=4/4; ncol2=6; w=6; offset=0; strand=R; shift=0; score=0.40912; CACGCr----------- ; cor=; Ncor= a 0.0 24.0 1.0 1.0 1.0 11.0 0 0 0 0 0 0 0 0 0 0 0 c 24.0 0.0 23.0 0.0 23.0 2.0 0 0 0 0 0 0 0 0 0 0 0 g 0.0 0.0 0.0 23.0 0.0 8.0 0 0 0 0 0 0 0 0 0 0 0 t 0.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 0 0 0 0 0 0