Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m40/peak-motifs_oligos_7nt_mkv5_m40.tf
		file1	1	12	3440
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m40 MA0746.2 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 SP3 0.933 0.861 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv5_m40 MA1515.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF2 0.926 0.849 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv5_m40 MA1517.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF6 0.924 0.847 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv5_m40 MA1516.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF3 0.918 0.841 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv5_m40 MA1512.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF11 0.910 0.834 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m40 MA0741.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF16 0.886 0.812 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m40 MA1564.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 SP9 0.921 0.779 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_7nt_mkv5_m40 MA1513.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF15 0.849 0.779 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m40 MA0740.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF14 0.895 0.768 12 14 12 14 0.8571 1.0000 0.8571 D 0
oligos_7nt_mkv5_m40 MA1511.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF10 0.834 0.764 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv5_m40 MA0747.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 SP8 0.901 0.763 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_7nt_mkv5_m40 MA0039.4 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF4 0.734 0.734 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m40 MA0493.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 Klf1 0.798 0.732 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv5_m40 MA0079.4 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 SP1 0.904 0.723 12 15 12 15 0.8000 1.0000 0.8000 D -2
oligos_7nt_mkv5_m40 MA0742.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 Klf12 0.889 0.711 12 15 12 15 0.8000 1.0000 0.8000 D 0
oligos_7nt_mkv5_m40 MA0599.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF5 0.846 0.705 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv5_m40 MA0685.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 SP4 0.900 0.635 12 17 12 17 0.7059 1.0000 0.7059 D -2
oligos_7nt_mkv5_m40 MA1514.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF17 0.735 0.588 12 15 12 15 0.8000 1.0000 0.8000 D 0
oligos_7nt_mkv5_m40 MA1107.2 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF9 0.776 0.582 12 16 12 16 0.7500 1.0000 0.7500 D -1
oligos_7nt_mkv5_m40 MA0657.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 KLF13 0.858 0.572 12 18 12 18 0.6667 1.0000 0.6667 D -1
oligos_7nt_mkv5_m40 MA0516.2 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 SP2 0.732 0.517 12 17 12 17 0.7059 1.0000 0.7059 D -3
oligos_7nt_mkv5_m40 MA0162.4 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 EGR1 0.794 0.496 12 14 10 16 0.6250 0.8333 0.7143 D -4
oligos_7nt_mkv5_m40 MA0472.2 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 EGR2 0.752 0.483 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv5_m40 MA0732.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 EGR3 0.778 0.458 12 15 10 17 0.5882 0.8333 0.6667 D 2
oligos_7nt_mkv5_m40 MA0130.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 ZNF354C 0.877 0.438 12 6 6 12 0.5000 0.5000 1.0000 D 0
oligos_7nt_mkv5_m40 MA0006.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 Ahr::Arnt 0.851 0.426 12 6 6 12 0.5000 0.5000 1.0000 R 3
oligos_7nt_mkv5_m40 MA0733.1 oligos_7nt_mkv5_m40oligos_7nt_mkv5_m40 EGR4 0.749 0.416 12 16 10 18 0.5556 0.8333 0.6250 D 2 
 Host name	pedagogix
 Job started	2020-04-14.155504
 Job done	2020-04-14.155538
 Seconds	4.82
	user	4.82
	system	0.54
	cuser	27.86
;	csystem	1.8