Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m43/peak-motifs_oligos_7nt_mkv5_m43.tf
		file1	1	11	11201
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m43 MA0521.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 Tcf12 0.861 0.718 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv5_m43 MA0816.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 Ascl2 0.944 0.708 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv5_m43 MA0500.2 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 MYOG 0.907 0.698 11 12 10 13 0.7692 0.9091 0.8333 R 1
oligos_7nt_mkv5_m43 MA0048.2 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 NHLH1 0.901 0.676 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv5_m43 MA1100.2 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 ASCL1 0.879 0.659 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m43 MA1635.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 BHLHE22(var.2) 0.872 0.654 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv5_m43 MA0091.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 TAL1::TCF3 0.706 0.647 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv5_m43 MA1472.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 BHLHA15(var.2) 0.859 0.645 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m43 MA1631.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 ASCL1(var.2) 0.756 0.639 11 13 11 13 0.8462 1.0000 0.8462 R 0
oligos_7nt_mkv5_m43 MA0691.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 TFAP4 0.840 0.630 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv5_m43 MA1648.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 TCF12(var.2) 0.750 0.625 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv5_m43 MA1467.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 ATOH1(var.2) 0.830 0.623 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m43 MA0832.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 Tcf21 0.790 0.621 11 14 11 14 0.7857 1.0000 0.7857 R 0
oligos_7nt_mkv5_m43 MA1619.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 Ptf1a(var.2) 0.807 0.621 11 12 10 13 0.7692 0.9091 0.8333 R 1
oligos_7nt_mkv5_m43 MA0522.3 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 TCF3 0.741 0.618 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv5_m43 MA0665.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 MSC 0.821 0.616 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv5_m43 MA1641.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 MYF5 0.799 0.615 11 12 10 13 0.7692 0.9091 0.8333 R 1
oligos_7nt_mkv5_m43 MA1485.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 FERD3L 0.771 0.606 11 14 11 14 0.7857 1.0000 0.7857 D 0
oligos_7nt_mkv5_m43 MA0830.2 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 TCF4 0.714 0.605 11 13 11 13 0.8462 1.0000 0.8462 R 0
oligos_7nt_mkv5_m43 MA0667.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 MYF6 0.739 0.554 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m43 MA0820.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 FIGLA 0.716 0.537 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m43 MA0499.2 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 MYOD1 0.752 0.537 11 13 10 14 0.7143 0.9091 0.7692 D 1
oligos_7nt_mkv5_m43 MA1529.1 oligos_7nt_mkv5_m43oligos_7nt_mkv5_m43 NHLH2 0.836 0.511 11 18 11 18 0.6111 1.0000 0.6111 D -2 
 Host name	pedagogix
 Job started	2020-04-14.155544
 Job done	2020-04-14.155614
 Seconds	4.41
	user	4.41
	system	0.48
	cuser	23.05
;	csystem	1.32