Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m44/peak-motifs_oligos_7nt_mkv5_m44.tf
		file1	1	11	1588
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m44 MA1630.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 Znf281 0.813 0.813 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m44 MA0747.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 SP8 0.794 0.728 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv5_m44 MA1564.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 SP9 0.756 0.693 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv5_m44 MA0767.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 GCM2 0.742 0.674 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv5_m44 MA1512.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF11 0.774 0.645 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv5_m44 MA0746.2 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 SP3 0.750 0.634 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_7nt_mkv5_m44 MA1511.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF10 0.750 0.625 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv5_m44 MA0056.2 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 MZF1 0.722 0.611 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_7nt_mkv5_m44 MA1627.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 Wt1 0.776 0.610 11 14 11 14 0.7857 1.0000 0.7857 D -2
oligos_7nt_mkv5_m44 MA0741.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF16 0.722 0.601 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv5_m44 MA1578.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 VEZF1 0.769 0.577 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m44 MA0740.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF14 0.727 0.571 11 14 11 14 0.7857 1.0000 0.7857 D -2
oligos_7nt_mkv5_m44 MA0162.4 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 EGR1 0.720 0.565 11 14 11 14 0.7857 1.0000 0.7857 D 0
oligos_7nt_mkv5_m44 MA0753.2 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 ZNF740 0.785 0.561 11 13 10 14 0.7143 0.9091 0.7692 D -3
oligos_7nt_mkv5_m44 MA1107.2 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF9 0.804 0.553 11 16 11 16 0.6875 1.0000 0.6875 D -3
oligos_7nt_mkv5_m44 MA1517.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF6 0.791 0.547 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m44 MA0155.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 INSM1 0.707 0.544 11 12 10 13 0.7692 0.9091 0.8333 R 1
oligos_7nt_mkv5_m44 MA0493.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 Klf1 0.782 0.541 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m44 MA0742.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 Klf12 0.734 0.539 11 15 11 15 0.7333 1.0000 0.7333 D -2
oligos_7nt_mkv5_m44 MA1515.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF2 0.770 0.533 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m44 MA0079.4 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 SP1 0.725 0.532 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_7nt_mkv5_m44 MA1516.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF3 0.717 0.497 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv5_m44 MA0736.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 GLIS2 0.737 0.491 11 14 10 15 0.6667 0.9091 0.7143 D 1
oligos_7nt_mkv5_m44 MA1584.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 ZIC5 0.714 0.491 11 16 11 16 0.6875 1.0000 0.6875 D 0
oligos_7nt_mkv5_m44 MA0039.4 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF4 0.756 0.486 11 12 9 14 0.6429 0.8182 0.7500 D 2
oligos_7nt_mkv5_m44 MA0733.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 EGR4 0.700 0.481 11 16 11 16 0.6875 1.0000 0.6875 D 0
oligos_7nt_mkv5_m44 MA0696.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 ZIC1 0.707 0.471 11 14 10 15 0.6667 0.9091 0.7143 D 1
oligos_7nt_mkv5_m44 MA0697.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 ZIC3 0.718 0.449 11 15 10 16 0.6250 0.9091 0.6667 D 1
oligos_7nt_mkv5_m44 MA0073.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 RREB1 0.814 0.448 11 20 11 20 0.5500 1.0000 0.5500 D -7
oligos_7nt_mkv5_m44 MA0599.1 oligos_7nt_mkv5_m44oligos_7nt_mkv5_m44 KLF5 0.817 0.408 11 10 7 14 0.5000 0.6364 0.7000 D -3 
 Host name	pedagogix
 Job started	2020-04-14.155615
 Job done	2020-04-14.155652
 Seconds	5.61
	user	5.62
	system	0.7
	cuser	29.03
;	csystem	1.55