Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45.tf
		file1	1	11	2501
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m45 MA0646.1 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 GCM1 0.706 0.706 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m45 MA0767.1 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 GCM2 0.750 0.682 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv5_m45 MA0002.2 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 RUNX1 0.810 0.675 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv5_m45 MA1601.1 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 ZNF75D 0.702 0.638 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv5_m45 MA1491.1 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 GLI3 0.763 0.560 11 15 11 15 0.7333 1.0000 0.7333 D -3
oligos_7nt_mkv5_m45 MA0734.2 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 GLI2 0.762 0.559 11 15 11 15 0.7333 1.0000 0.7333 D -3
oligos_7nt_mkv5_m45 MA1107.2 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 KLF9 0.810 0.557 11 16 11 16 0.6875 1.0000 0.6875 D -5
oligos_7nt_mkv5_m45 MA1511.1 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 KLF10 0.772 0.441 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv5_m45 MA1523.1 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 MSANTD3 0.705 0.434 11 10 8 13 0.6154 0.7273 0.8000 D -2
oligos_7nt_mkv5_m45 MA0088.2 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 ZNF143 0.731 0.430 11 16 10 17 0.5882 0.9091 0.6250 D 1
oligos_7nt_mkv5_m45 MA0130.1 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 ZNF354C 0.779 0.425 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_7nt_mkv5_m45 MA1512.1 oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45 KLF11 0.711 0.406 11 11 8 14 0.5714 0.7273 0.7273 D -3 
 Host name	pedagogix
 Job started	2020-04-14.155653
 Job done	2020-04-14.155706
 Seconds	2.44
	user	2.44
	system	0.22
	cuser	10.18
;	csystem	0.62