One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m45/peak-motifs_oligos_7nt_mkv5_m45_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m45_shift5 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m45_shift5 (oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45)
; oligos_7nt_mkv5_m45 (oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45); m=0 (reference); ncol1=11; shift=5; ncol=17; -----mcACCCACAsv- ; Alignment reference a 0 0 0 0 0 728 496 2501 14 8 1 2497 3 2483 397 682 0 c 0 0 0 0 0 683 1149 0 2477 2464 2452 0 2446 3 775 745 0 g 0 0 0 0 0 587 462 0 0 28 35 4 1 15 952 647 0 t 0 0 0 0 0 503 394 0 10 1 13 0 51 0 377 427 0

MA0646.1_rc_shift5 (GCM1_rc)
; oligos_7nt_mkv5_m45 versus MA0646.1_rc (GCM1_rc); m=1/12; ncol2=11; w=11; offset=0; strand=R; shift=5; score=0.706434; -----gtACCCGCATg- ; cor=; Ncor= a 0 0 0 0 0 2409.0 2014.0 21439.0 10.0 35.0 3815.0 880.0 15.0 21439.0 261.0 5210.0 0 c 0 0 0 0 0 4829.0 7971.0 147.0 21439.0 21439.0 21439.0 572.0 21439.0 96.0 4010.0 5154.0 0 g 0 0 0 0 0 13412.0 2905.0 4992.0 18.0 4.0 255.0 21439.0 274.0 154.0 1811.0 8553.0 0 t 0 0 0 0 0 789.0 21439.0 146.0 0.0 0.0 594.0 1002.0 4371.0 161.0 21439.0 2522.0 0

MA0767.1_rc_shift6 (GCM2_rc)
; oligos_7nt_mkv5_m45 versus MA0767.1_rc (GCM2_rc); m=2/12; ncol2=10; w=10; offset=1; strand=R; shift=6; score=0.682112; ------yrCCCGCATv- ; cor=; Ncor= a 0 0 0 0 0 0 240.0 1320.0 0.0 13.0 66.0 127.0 0.0 1320.0 45.0 427.0 0 c 0 0 0 0 0 0 341.0 91.0 1320.0 1320.0 1320.0 138.0 1320.0 24.0 299.0 375.0 0 g 0 0 0 0 0 0 140.0 533.0 0.0 0.0 1.0 1320.0 32.0 41.0 77.0 340.0 0 t 0 0 0 0 0 0 599.0 92.0 1.0 0.0 51.0 84.0 263.0 23.0 1320.0 179.0 0

MA0002.2_rc_shift6 (RUNX1_rc)
; oligos_7nt_mkv5_m45 versus MA0002.2_rc (RUNX1_rc); m=3/12; ncol2=11; w=10; offset=1; strand=R; shift=6; score=0.675308; ------waaCCACAram ; cor=; Ncor= a 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0

MA1601.1_rc_shift5 (ZNF75D_rc)
; oligos_7nt_mkv5_m45 versus MA1601.1_rc (ZNF75D_rc); m=4/12; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.638413; -----TyTCCCACay-- ; cor=; Ncor= a 0 0 0 0 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 0 c 0 0 0 0 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 0 g 0 0 0 0 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 0 t 0 0 0 0 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0 0

MA1491.1_shift2 (GLI3)
; oligos_7nt_mkv5_m45 versus MA1491.1 (GLI3); m=5/12; ncol2=15; w=11; offset=-3; strand=D; shift=2; score=0.559731; --vGACCACCCACgwcG ; cor=; Ncor= a 0 0 9265.0 177.0 17348.0 68.0 7.0 18184.0 3.0 4984.0 528.0 18709.0 2186.0 4643.0 8397.0 6506.0 953.0 c 0 0 7913.0 232.0 3972.0 19263.0 19329.0 2211.0 19326.0 18084.0 18879.0 0.0 17927.0 5419.0 3326.0 11363.0 2625.0 g 0 0 7702.0 18754.0 2832.0 7.0 1.0 194.0 4.0 1.0 15.0 1486.0 1360.0 12721.0 5324.0 2363.0 17621.0 t 0 0 2622.0 1323.0 3.0 0.0 0.0 699.0 1.0 2.0 323.0 0.0 1506.0 1615.0 9056.0 6602.0 1731.0

MA0734.2_shift2 (GLI2)
; oligos_7nt_mkv5_m45 versus MA0734.2 (GLI2); m=6/12; ncol2=15; w=11; offset=-3; strand=D; shift=2; score=0.558821; --vGACCACCCACgwyG ; cor=; Ncor= a 0 0 5234.0 88.0 14096.0 0.0 0.0 15762.0 0.0 3319.0 167.0 16175.0 1207.0 3354.0 7613.0 4438.0 503.0 c 0 0 4901.0 215.0 2886.0 16427.0 16442.0 675.0 16444.0 15079.0 16216.0 7.0 15453.0 4113.0 1810.0 9203.0 1257.0 g 0 0 4702.0 15957.0 1758.0 0.0 0.0 97.0 0.0 0.0 13.0 539.0 694.0 13225.0 3253.0 1368.0 15481.0 t 0 0 1607.0 728.0 0.0 8.0 1.0 302.0 0.0 0.0 152.0 24.0 841.0 1146.0 7647.0 5871.0 777.0

MA1107.2_shift0 (KLF9)
; oligos_7nt_mkv5_m45 versus MA1107.2 (KLF9); m=7/12; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.557075; crgCCACACCCAChyc- ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0 0

MA1511.1_shift2 (KLF10)
; oligos_7nt_mkv5_m45 versus MA1511.1 (KLF10); m=8/12; ncol2=11; w=8; offset=-3; strand=D; shift=2; score=0.440888; --gmCACrCCCmy---- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0

MA1523.1_shift3 (MSANTD3)
; oligos_7nt_mkv5_m45 versus MA1523.1 (MSANTD3); m=9/12; ncol2=10; w=8; offset=-2; strand=D; shift=3; score=0.433693; ---stmCACTCAm---- ; cor=; Ncor= a 0 0 0 98.0 111.0 332.0 64.0 980.0 31.0 37.0 47.0 775.0 271.0 0 0 0 0 c 0 0 0 269.0 211.0 272.0 723.0 0.0 896.0 7.0 862.0 140.0 568.0 0 0 0 0 g 0 0 0 515.0 220.0 249.0 31.0 2.0 27.0 0.0 29.0 24.0 63.0 0 0 0 0 t 0 0 0 117.0 456.0 145.0 180.0 16.0 45.0 954.0 60.0 59.0 96.0 0 0 0 0

MA0088.2_shift6 (ZNF143)
; oligos_7nt_mkv5_m45 versus MA0088.2 (ZNF143); m=10/12; ncol2=16; w=10; offset=1; strand=D; shift=6; score=0.430092; ------ywCCCAyAATG ; cor=; Ncor= a 0 0 0 0 0 0 87.0 949.0 21.0 2.0 0.0 1609.0 0.0 1295.0 1572.0 6.0 59.0 c 0 0 0 0 0 0 509.0 0.0 1590.0 1609.0 1609.0 0.0 917.0 143.0 0.0 0.0 36.0 g 0 0 0 0 0 0 153.0 13.0 1.0 0.0 0.0 4.0 61.0 310.0 67.0 1.0 1553.0 t 0 0 0 0 0 0 1285.0 652.0 1.0 0.0 0.0 3.0 686.0 0.0 1.0 1609.0 9.0

MA0130.1_shift7 (ZNF354C)
; oligos_7nt_mkv5_m45 versus MA0130.1 (ZNF354C); m=11/12; ncol2=6; w=6; offset=2; strand=D; shift=7; score=0.425018; -------mTCCAC---- ; cor=; Ncor= a 0 0 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 g 0 0 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 t 0 0 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0

MA1512.1_shift2 (KLF11)
; oligos_7nt_mkv5_m45 versus MA1512.1 (KLF11); m=12/12; ncol2=11; w=8; offset=-3; strand=D; shift=2; score=0.406182; --gcCACGCCCmC---- ; cor=; Ncor= a 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 c 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 g 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 t 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m45_shift5 (oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45)				; oligos_7nt_mkv5_m45 (oligos_7nt_mkv5_m45oligos_7nt_mkv5_m45); m=0 (reference); ncol1=11; shift=5; ncol=17; -----mcACCCACAsv- ; Alignment reference a 0 0 0 0 0 728 496 2501 14 8 1 2497 3 2483 397 682 0 c 0 0 0 0 0 683 1149 0 2477 2464 2452 0 2446 3 775 745 0 g 0 0 0 0 0 587 462 0 0 28 35 4 1 15 952 647 0 t 0 0 0 0 0 503 394 0 10 1 13 0 51 0 377 427 0
MA0646.1_rc_shift5 (GCM1_rc)				; oligos_7nt_mkv5_m45 versus MA0646.1_rc (GCM1_rc); m=1/12; ncol2=11; w=11; offset=0; strand=R; shift=5; score=0.706434; -----gtACCCGCATg- ; cor=; Ncor= a 0 0 0 0 0 2409.0 2014.0 21439.0 10.0 35.0 3815.0 880.0 15.0 21439.0 261.0 5210.0 0 c 0 0 0 0 0 4829.0 7971.0 147.0 21439.0 21439.0 21439.0 572.0 21439.0 96.0 4010.0 5154.0 0 g 0 0 0 0 0 13412.0 2905.0 4992.0 18.0 4.0 255.0 21439.0 274.0 154.0 1811.0 8553.0 0 t 0 0 0 0 0 789.0 21439.0 146.0 0.0 0.0 594.0 1002.0 4371.0 161.0 21439.0 2522.0 0
MA0767.1_rc_shift6 (GCM2_rc)				; oligos_7nt_mkv5_m45 versus MA0767.1_rc (GCM2_rc); m=2/12; ncol2=10; w=10; offset=1; strand=R; shift=6; score=0.682112; ------yrCCCGCATv- ; cor=; Ncor= a 0 0 0 0 0 0 240.0 1320.0 0.0 13.0 66.0 127.0 0.0 1320.0 45.0 427.0 0 c 0 0 0 0 0 0 341.0 91.0 1320.0 1320.0 1320.0 138.0 1320.0 24.0 299.0 375.0 0 g 0 0 0 0 0 0 140.0 533.0 0.0 0.0 1.0 1320.0 32.0 41.0 77.0 340.0 0 t 0 0 0 0 0 0 599.0 92.0 1.0 0.0 51.0 84.0 263.0 23.0 1320.0 179.0 0
MA0002.2_rc_shift6 (RUNX1_rc)				; oligos_7nt_mkv5_m45 versus MA0002.2_rc (RUNX1_rc); m=3/12; ncol2=11; w=10; offset=1; strand=R; shift=6; score=0.675308; ------waaCCACAram ; cor=; Ncor= a 0 0 0 0 0 0 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 c 0 0 0 0 0 0 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 g 0 0 0 0 0 0 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 t 0 0 0 0 0 0 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0
MA1601.1_rc_shift5 (ZNF75D_rc)				; oligos_7nt_mkv5_m45 versus MA1601.1_rc (ZNF75D_rc); m=4/12; ncol2=10; w=10; offset=0; strand=R; shift=5; score=0.638413; -----TyTCCCACay-- ; cor=; Ncor= a 0 0 0 0 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 0 c 0 0 0 0 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 0 g 0 0 0 0 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 0 t 0 0 0 0 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0 0
MA1491.1_shift2 (GLI3)				; oligos_7nt_mkv5_m45 versus MA1491.1 (GLI3); m=5/12; ncol2=15; w=11; offset=-3; strand=D; shift=2; score=0.559731; --vGACCACCCACgwcG ; cor=; Ncor= a 0 0 9265.0 177.0 17348.0 68.0 7.0 18184.0 3.0 4984.0 528.0 18709.0 2186.0 4643.0 8397.0 6506.0 953.0 c 0 0 7913.0 232.0 3972.0 19263.0 19329.0 2211.0 19326.0 18084.0 18879.0 0.0 17927.0 5419.0 3326.0 11363.0 2625.0 g 0 0 7702.0 18754.0 2832.0 7.0 1.0 194.0 4.0 1.0 15.0 1486.0 1360.0 12721.0 5324.0 2363.0 17621.0 t 0 0 2622.0 1323.0 3.0 0.0 0.0 699.0 1.0 2.0 323.0 0.0 1506.0 1615.0 9056.0 6602.0 1731.0
MA0734.2_shift2 (GLI2)				; oligos_7nt_mkv5_m45 versus MA0734.2 (GLI2); m=6/12; ncol2=15; w=11; offset=-3; strand=D; shift=2; score=0.558821; --vGACCACCCACgwyG ; cor=; Ncor= a 0 0 5234.0 88.0 14096.0 0.0 0.0 15762.0 0.0 3319.0 167.0 16175.0 1207.0 3354.0 7613.0 4438.0 503.0 c 0 0 4901.0 215.0 2886.0 16427.0 16442.0 675.0 16444.0 15079.0 16216.0 7.0 15453.0 4113.0 1810.0 9203.0 1257.0 g 0 0 4702.0 15957.0 1758.0 0.0 0.0 97.0 0.0 0.0 13.0 539.0 694.0 13225.0 3253.0 1368.0 15481.0 t 0 0 1607.0 728.0 0.0 8.0 1.0 302.0 0.0 0.0 152.0 24.0 841.0 1146.0 7647.0 5871.0 777.0
MA1107.2_shift0 (KLF9)				; oligos_7nt_mkv5_m45 versus MA1107.2 (KLF9); m=7/12; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.557075; crgCCACACCCAChyc- ; cor=; Ncor= a 5359.0 8015.0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 6948.0 4110.0 5875.0 0 c 10412.0 5108.0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 8797.0 10520.0 9519.0 0 g 5200.0 7779.0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 3289.0 4423.0 5681.0 0 t 4608.0 4677.0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 6545.0 6526.0 4504.0 0
MA1511.1_shift2 (KLF10)				; oligos_7nt_mkv5_m45 versus MA1511.1 (KLF10); m=8/12; ncol2=11; w=8; offset=-3; strand=D; shift=2; score=0.440888; --gmCACrCCCmy---- ; cor=; Ncor= a 0 0 4746.0 6633.0 633.0 18751.0 238.0 13506.0 1.0 0.0 0.0 7545.0 934.0 0 0 0 0 c 0 0 2435.0 12654.0 19619.0 1663.0 19907.0 11.0 19995.0 19994.0 19244.0 11403.0 13118.0 0 0 0 0 g 0 0 14086.0 1299.0 98.0 1723.0 3.0 6234.0 2.0 0.0 0.0 587.0 770.0 0 0 0 0 t 0 0 1251.0 1373.0 485.0 6.0 157.0 543.0 0.0 0.0 2198.0 2686.0 6274.0 0 0 0 0
MA1523.1_shift3 (MSANTD3)				; oligos_7nt_mkv5_m45 versus MA1523.1 (MSANTD3); m=9/12; ncol2=10; w=8; offset=-2; strand=D; shift=3; score=0.433693; ---stmCACTCAm---- ; cor=; Ncor= a 0 0 0 98.0 111.0 332.0 64.0 980.0 31.0 37.0 47.0 775.0 271.0 0 0 0 0 c 0 0 0 269.0 211.0 272.0 723.0 0.0 896.0 7.0 862.0 140.0 568.0 0 0 0 0 g 0 0 0 515.0 220.0 249.0 31.0 2.0 27.0 0.0 29.0 24.0 63.0 0 0 0 0 t 0 0 0 117.0 456.0 145.0 180.0 16.0 45.0 954.0 60.0 59.0 96.0 0 0 0 0
MA0088.2_shift6 (ZNF143)				; oligos_7nt_mkv5_m45 versus MA0088.2 (ZNF143); m=10/12; ncol2=16; w=10; offset=1; strand=D; shift=6; score=0.430092; ------ywCCCAyAATG ; cor=; Ncor= a 0 0 0 0 0 0 87.0 949.0 21.0 2.0 0.0 1609.0 0.0 1295.0 1572.0 6.0 59.0 c 0 0 0 0 0 0 509.0 0.0 1590.0 1609.0 1609.0 0.0 917.0 143.0 0.0 0.0 36.0 g 0 0 0 0 0 0 153.0 13.0 1.0 0.0 0.0 4.0 61.0 310.0 67.0 1.0 1553.0 t 0 0 0 0 0 0 1285.0 652.0 1.0 0.0 0.0 3.0 686.0 0.0 1.0 1609.0 9.0
MA0130.1_shift7 (ZNF354C)				; oligos_7nt_mkv5_m45 versus MA0130.1 (ZNF354C); m=11/12; ncol2=6; w=6; offset=2; strand=D; shift=7; score=0.425018; -------mTCCAC---- ; cor=; Ncor= a 0 0 0 0 0 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 c 0 0 0 0 0 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 g 0 0 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 t 0 0 0 0 0 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0
MA1512.1_shift2 (KLF11)				; oligos_7nt_mkv5_m45 versus MA1512.1 (KLF11); m=12/12; ncol2=11; w=8; offset=-3; strand=D; shift=2; score=0.406182; --gcCACGCCCmC---- ; cor=; Ncor= a 0 0 1882.0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 0 0 0 c 0 0 2054.0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 0 0 0 g 0 0 3930.0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 0 0 0 t 0 0 1299.0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0 0 0 0