One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m46/peak-motifs_oligos_7nt_mkv5_m46.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m46/peak-motifs_oligos_7nt_mkv5_m46_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m46_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m46_shift0 (oligos_7nt_mkv5_m46oligos_7nt_mkv5_m46) |
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; oligos_7nt_mkv5_m46 (oligos_7nt_mkv5_m46oligos_7nt_mkv5_m46); m=0 (reference); ncol1=11; shift=0; ncol=15; ssCGGGCTCss----
; Alignment reference
a 162 173 0 0 0 21 21 0 4 242 221 0 0 0 0
c 905 529 1816 0 127 0 1736 0 1812 666 522 0 0 0 0
g 476 813 0 1816 1689 1771 38 133 0 595 840 0 0 0 0
t 273 301 0 0 0 24 21 1683 0 313 233 0 0 0 0
|
| MA1581.1_rc_shift2 (ZBTB6_rc) |
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; oligos_7nt_mkv5_m46 versus MA1581.1_rc (ZBTB6_rc); m=1/1; ncol2=13; w=9; offset=2; strand=R; shift=2; score=0.428388; --skGGCTCAAGsrh
; cor=; Ncor=
a 0 0 344.0 464.0 223.0 46.0 14.0 21.0 7.0 1566.0 2042.0 28.0 165.0 725.0 604.0
c 0 0 749.0 467.0 88.0 38.0 2135.0 20.0 2148.0 409.0 52.0 25.0 593.0 481.0 713.0
g 0 0 593.0 707.0 1814.0 2087.0 20.0 28.0 59.0 45.0 104.0 2080.0 1157.0 623.0 317.0
t 0 0 541.0 589.0 102.0 56.0 58.0 2158.0 13.0 207.0 29.0 94.0 312.0 398.0 593.0
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