One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m47/peak-motifs_oligos_7nt_mkv5_m47.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m47/peak-motifs_oligos_7nt_mkv5_m47_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m47_shift3 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m47_shift3 (oligos_7nt_mkv5_m47oligos_7nt_mkv5_m47)
; oligos_7nt_mkv5_m47 (oligos_7nt_mkv5_m47oligos_7nt_mkv5_m47); m=0 (reference); ncol1=11; shift=3; ncol=14; ---csCGCrCCGcs ; Alignment reference a 0 0 0 174 199 0 0 48 1037 14 0 0 191 208 c 0 0 0 868 513 1651 0 1413 57 1603 1607 3 924 488 g 0 0 0 389 795 4 1655 119 544 24 48 1652 384 811 t 0 0 0 224 148 0 0 75 17 14 0 0 156 148

MA1650.1_shift0 (ZBTB14)
; oligos_7nt_mkv5_m47 versus MA1650.1 (ZBTB14); m=1/3; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.48691; ssCCGCGCACss-- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0

MA0632.2_shift0 (TCFL5)
; oligos_7nt_mkv5_m47 versus MA0632.2 (TCFL5); m=2/3; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.419315; kCrCGCGCmc---- ; cor=; Ncor= a 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 0 0 0 0 c 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 0 0 0 0 g 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 0 0 0 0 t 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0 0 0 0 0

MA0006.1_rc_shift3 (Ahr::Arnt_rc)
; oligos_7nt_mkv5_m47 versus MA0006.1_rc (Ahr::Arnt_rc); m=3/3; ncol2=6; w=6; offset=0; strand=R; shift=3; score=0.418989; ---CACGCr----- ; cor=; Ncor= a 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 0 0 0 c 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 0 0 0 g 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m47_shift3 (oligos_7nt_mkv5_m47oligos_7nt_mkv5_m47)				; oligos_7nt_mkv5_m47 (oligos_7nt_mkv5_m47oligos_7nt_mkv5_m47); m=0 (reference); ncol1=11; shift=3; ncol=14; ---csCGCrCCGcs ; Alignment reference a 0 0 0 174 199 0 0 48 1037 14 0 0 191 208 c 0 0 0 868 513 1651 0 1413 57 1603 1607 3 924 488 g 0 0 0 389 795 4 1655 119 544 24 48 1652 384 811 t 0 0 0 224 148 0 0 75 17 14 0 0 156 148
MA1650.1_shift0 (ZBTB14)				; oligos_7nt_mkv5_m47 versus MA1650.1 (ZBTB14); m=1/3; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.48691; ssCCGCGCACss-- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0
MA0632.2_shift0 (TCFL5)				; oligos_7nt_mkv5_m47 versus MA0632.2 (TCFL5); m=2/3; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.419315; kCrCGCGCmc---- ; cor=; Ncor= a 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 10588.0 0 0 0 0 c 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 47538.0 0 0 0 0 g 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 5747.0 0 0 0 0 t 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0 8670.0 0 0 0 0
MA0006.1_rc_shift3 (Ahr::Arnt_rc)				; oligos_7nt_mkv5_m47 versus MA0006.1_rc (Ahr::Arnt_rc); m=3/3; ncol2=6; w=6; offset=0; strand=R; shift=3; score=0.418989; ---CACGCr----- ; cor=; Ncor= a 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 0 0 0 c 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 0 0 0 g 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0