Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48.tf
		file1	1	11	4188
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m48 MA0773.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 MEF2D 0.820 0.751 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_7nt_mkv5_m48 MA0660.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 MEF2B 0.807 0.739 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_7nt_mkv5_m48 MA0148.4 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXA1 0.744 0.682 11 12 11 12 0.9167 1.0000 0.9167 R 0
oligos_7nt_mkv5_m48 MA0052.4 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 MEF2A 0.894 0.655 11 15 11 15 0.7333 1.0000 0.7333 R -3
oligos_7nt_mkv5_m48 MA0497.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 MEF2C 0.854 0.626 11 15 11 15 0.7333 1.0000 0.7333 R -2
oligos_7nt_mkv5_m48 MA1606.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 Foxf1 0.700 0.584 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv5_m48 MA0031.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXD1 0.720 0.523 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m48 MA0613.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXG1 0.705 0.513 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m48 MA0032.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXC1 0.733 0.507 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv5_m48 MA0901.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXB13 0.740 0.494 11 14 10 15 0.6667 0.9091 0.7143 R 1
oligos_7nt_mkv5_m48 MA0845.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXB1 0.713 0.493 11 11 9 13 0.6923 0.8182 0.8182 R 2
oligos_7nt_mkv5_m48 MA0033.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXL1 0.770 0.490 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m48 MA0042.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXI1 0.742 0.472 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m48 MA0913.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXD9 0.764 0.470 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m48 MA0848.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXO4 0.738 0.470 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m48 MA0908.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXD11 0.759 0.467 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m48 MA0087.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 Sox5 0.728 0.464 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv5_m48 MA0850.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXP3 0.727 0.463 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m48 MA0849.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXO6 0.726 0.462 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv5_m48 MA0905.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXC10 0.736 0.453 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m48 MA0899.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXA10 0.789 0.451 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA0911.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 Hoxa11 0.700 0.450 11 12 9 14 0.6429 0.8182 0.7500 R 2
oligos_7nt_mkv5_m48 MA0485.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXC9 0.715 0.440 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m48 MA1503.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXB9 0.707 0.435 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv5_m48 MA0907.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXC13 0.760 0.434 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA0847.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 FOXD2 0.712 0.427 11 13 9 15 0.6000 0.8182 0.6923 R 2
oligos_7nt_mkv5_m48 MA0906.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXC12 0.747 0.427 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA1506.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXD10 0.743 0.425 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA0873.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXD12 0.743 0.424 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA0650.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXA13 0.733 0.419 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA1473.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 CDX4 0.725 0.414 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA0757.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 ONECUT3 0.733 0.412 11 14 9 16 0.5625 0.8182 0.6429 R -5
oligos_7nt_mkv5_m48 MA0651.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 HOXC11 0.711 0.406 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA0878.2 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 CDX1 0.707 0.404 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv5_m48 MA0756.1 oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48 ONECUT2 0.716 0.403 11 14 9 16 0.5625 0.8182 0.6429 R -5 
 Host name	pedagogix
 Job started	2020-04-14.155719
 Job done	2020-04-14.155807
 Seconds	6.49
	user	6.49
	system	1.91
	cuser	36.35
;	csystem	2.84