One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m48/peak-motifs_oligos_7nt_mkv5_m48_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m48_shift5 ; 36 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m48_shift5 (oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48)
; oligos_7nt_mkv5_m48 (oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48); m=0 (reference); ncol1=11; shift=5; ncol=16; -----yyATTTTTAkm ; Alignment reference a 0 0 0 0 0 867 583 3587 150 183 114 250 205 3727 1044 1162 c 0 0 0 0 0 1193 1199 188 117 189 246 264 149 110 834 1224 g 0 0 0 0 0 1001 776 217 158 217 161 206 121 165 1225 781 t 0 0 0 0 0 1127 1630 196 3763 3599 3667 3468 3713 186 1085 1021

MA0773.1_rc_shift4 (MEF2D_rc)
; oligos_7nt_mkv5_m48 versus MA0773.1_rc (MEF2D_rc); m=1/35; ncol2=12; w=11; offset=-1; strand=R; shift=4; score=0.751462; ----kCTATTTwTAGh ; cor=; Ncor= a 0 0 0 0 585.0 5.0 0.0 5803.0 69.0 217.0 778.0 3021.0 6.0 5803.0 53.0 1642.0 c 0 0 0 0 70.0 5803.0 4.0 0.0 1.0 2.0 0.0 2.0 2.0 0.0 0.0 1933.0 g 0 0 0 0 2598.0 17.0 0.0 0.0 2.0 0.0 4.0 0.0 8.0 22.0 5803.0 109.0 t 0 0 0 0 3206.0 339.0 5803.0 0.0 5803.0 5803.0 5803.0 2782.0 5803.0 3.0 28.0 2120.0

MA0660.1_rc_shift4 (MEF2B_rc)
; oligos_7nt_mkv5_m48 versus MA0660.1_rc (MEF2B_rc); m=2/35; ncol2=12; w=11; offset=-1; strand=R; shift=4; score=0.73931; ----kCTATTTwTAGy ; cor=; Ncor= a 0 0 0 0 506.0 3.0 3.0 3150.0 45.0 143.0 710.0 1655.0 15.0 3150.0 12.0 505.0 c 0 0 0 0 99.0 3150.0 2.0 0.0 0.0 2.0 12.0 0.0 0.0 0.0 0.0 1766.0 g 0 0 0 0 2138.0 19.0 3.0 0.0 0.0 3.0 0.0 2.0 0.0 25.0 3150.0 72.0 t 0 0 0 0 1013.0 98.0 3150.0 0.0 3150.0 3150.0 3150.0 1495.0 3150.0 0.0 18.0 1385.0

MA0148.4_rc_shift5 (FOXA1_rc)
; oligos_7nt_mkv5_m48 versus MA0148.4_rc (FOXA1_rc); m=3/35; ncol2=12; w=11; offset=0; strand=R; shift=5; score=0.681714; -----whATGTTTACw ; cor=; Ncor= a 0 0 0 0 0 99726.0 85316.0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 137954.0 c 0 0 0 0 0 70936.0 94376.0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 53682.0 g 0 0 0 0 0 64037.0 60571.0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 16071.0 t 0 0 0 0 0 88104.0 82540.0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 115096.0

MA0052.4_rc_shift2 (MEF2A_rc)
; oligos_7nt_mkv5_m48 versus MA0052.4_rc (MEF2A_rc); m=4/35; ncol2=15; w=11; offset=-3; strand=R; shift=2; score=0.655479; --wwtCTATTTTTAgm ; cor=; Ncor= a 0 0 4617.0 4658.0 2809.0 1432.0 108.0 15157.0 831.0 1237.0 835.0 2167.0 1646.0 12325.0 2252.0 5676.0 c 0 0 2479.0 1810.0 1605.0 11104.0 422.0 215.0 202.0 241.0 506.0 610.0 1066.0 236.0 1007.0 4493.0 g 0 0 3812.0 3523.0 4039.0 1060.0 50.0 349.0 173.0 231.0 141.0 253.0 1013.0 2974.0 10919.0 1960.0 t 0 0 5254.0 6171.0 7709.0 2566.0 15582.0 441.0 14956.0 14453.0 14680.0 13132.0 12437.0 627.0 1984.0 4033.0

MA0497.1_rc_shift3 (MEF2C_rc)
; oligos_7nt_mkv5_m48 versus MA0497.1_rc (MEF2C_rc); m=5/35; ncol2=15; w=11; offset=-2; strand=R; shift=3; score=0.626445; ---wkCTATTTTTrgm ; cor=; Ncor= a 0 0 0 624.0 250.0 29.0 0.0 2091.0 70.0 76.0 15.0 230.0 263.0 1224.0 337.0 760.0 c 0 0 0 126.0 148.0 1671.0 32.0 0.0 4.0 2.0 87.0 241.0 74.0 0.0 78.0 822.0 g 0 0 0 450.0 836.0 120.0 0.0 62.0 0.0 0.0 0.0 32.0 256.0 985.0 1412.0 196.0 t 0 0 0 1009.0 975.0 389.0 2177.0 56.0 2135.0 2131.0 2107.0 1706.0 1616.0 0.0 382.0 431.0

MA1606.1_rc_shift6 (Foxf1_rc)
; oligos_7nt_mkv5_m48 versus MA1606.1_rc (Foxf1_rc); m=6/35; ncol2=11; w=10; offset=1; strand=R; shift=6; score=0.583655; ------ttTGTTTAyw ; cor=; Ncor= a 0 0 0 0 0 0 14658.0 13930.0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 26418.0 c 0 0 0 0 0 0 12844.0 14294.0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 8287.0 g 0 0 0 0 0 0 11715.0 12643.0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 7560.0 t 0 0 0 0 0 0 20323.0 18673.0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 17275.0

MA0031.1_rc_shift7 (FOXD1_rc)
; oligos_7nt_mkv5_m48 versus MA0031.1_rc (FOXD1_rc); m=7/35; ncol2=8; w=8; offset=2; strand=R; shift=7; score= 0.5235; -------wTGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 c 0 0 0 0 0 0 0 3.0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 g 0 0 0 0 0 0 0 2.0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 t 0 0 0 0 0 0 0 7.0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0

MA0613.1_rc_shift7 (FOXG1_rc)
; oligos_7nt_mkv5_m48 versus MA0613.1_rc (FOXG1_rc); m=8/35; ncol2=8; w=8; offset=2; strand=R; shift=7; score=0.512822; -------wTGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 333.0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 0 c 0 0 0 0 0 0 0 2.0 1.0 1.0 1.0 1.0 1.0 1.0 623.0 0 g 0 0 0 0 0 0 0 167.0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 0 0 0 0 498.0 997.0 1.0 997.0 997.0 997.0 1.0 374.0 0

MA0032.2_rc_shift7 (FOXC1_rc)
; oligos_7nt_mkv5_m48 versus MA0032.2_rc (FOXC1_rc); m=9/35; ncol2=11; w=9; offset=2; strand=R; shift=7; score=0.50722; -------wTrTTKAYw ; cor=; Ncor= a 0 0 0 0 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 c 0 0 0 0 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 g 0 0 0 0 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 t 0 0 0 0 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0

MA0901.2_rc_shift6 (HOXB13_rc)
; oligos_7nt_mkv5_m48 versus MA0901.2_rc (HOXB13_rc); m=10/35; ncol2=14; w=10; offset=1; strand=R; shift=6; score=0.493616; ------wwwTTTTATT ; cor=; Ncor= a 0 0 0 0 0 0 27987.0 27647.0 35955.0 4137.0 1252.0 1628.0 3496.0 77157.0 3031.0 7343.0 c 0 0 0 0 0 0 12165.0 11759.0 7376.0 1882.0 625.0 490.0 1083.0 586.0 1913.0 351.0 g 0 0 0 0 0 0 13391.0 13152.0 12415.0 2465.0 760.0 599.0 523.0 550.0 726.0 4611.0 t 0 0 0 0 0 0 25171.0 26156.0 22968.0 70230.0 76077.0 75997.0 73612.0 421.0 73044.0 66409.0

MA0845.1_rc_shift7 (FOXB1_rc)
; oligos_7nt_mkv5_m48 versus MA0845.1_rc (FOXB1_rc); m=11/35; ncol2=11; w=9; offset=2; strand=R; shift=7; score=0.49333; -------aTrTTKACw ; cor=; Ncor= a 0 0 0 0 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 c 0 0 0 0 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 g 0 0 0 0 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 t 0 0 0 0 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0

MA0033.2_rc_shift8 (FOXL1_rc)
; oligos_7nt_mkv5_m48 versus MA0033.2_rc (FOXL1_rc); m=12/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.489695; --------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 c 0 0 0 0 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 g 0 0 0 0 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 t 0 0 0 0 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0

MA0042.2_rc_shift8 (FOXI1_rc)
; oligos_7nt_mkv5_m48 versus MA0042.2_rc (FOXI1_rc); m=13/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.472286; --------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 c 0 0 0 0 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 g 0 0 0 0 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 t 0 0 0 0 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0

MA0913.2_rc_shift8 (HOXD9_rc)
; oligos_7nt_mkv5_m48 versus MA0913.2_rc (HOXD9_rc); m=14/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.469881; --------dTTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4241.0 2194.0 0.0 123.0 5445.0 16363.0 4.0 927.0 c 0 0 0 0 0 0 0 0 2169.0 1216.0 0.0 0.0 0.0 0.0 439.0 675.0 g 0 0 0 0 0 0 0 0 5804.0 2202.0 0.0 0.0 8.0 0.0 226.0 8643.0 t 0 0 0 0 0 0 0 0 4149.0 16363.0 16363.0 16363.0 16363.0 215.0 16363.0 16363.0

MA0848.1_rc_shift8 (FOXO4_rc)
; oligos_7nt_mkv5_m48 versus MA0848.1_rc (FOXO4_rc); m=15/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.469604; --------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 c 0 0 0 0 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 g 0 0 0 0 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 t 0 0 0 0 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0

MA0908.1_rc_shift8 (HOXD11_rc)
; oligos_7nt_mkv5_m48 versus MA0908.1_rc (HOXD11_rc); m=16/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.46677; --------wtTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 69.0 71.0 7.0 3.0 56.0 230.0 0.0 23.0 c 0 0 0 0 0 0 0 0 23.0 28.0 0.0 0.0 0.0 0.0 230.0 0.0 g 0 0 0 0 0 0 0 0 51.0 29.0 4.0 0.0 0.0 0.0 0.0 230.0 t 0 0 0 0 0 0 0 0 88.0 230.0 230.0 230.0 175.0 8.0 68.0 16.0

MA0087.1_shift7 (Sox5)
; oligos_7nt_mkv5_m48 versus MA0087.1 (Sox5); m=17/35; ncol2=7; w=7; offset=2; strand=D; shift=7; score=0.463534; -------ATTGTTw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 23.0 0.0 0.0 1.0 0.0 1.0 8.0 0 0 c 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 3.0 0 0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 22.0 0.0 0.0 4.0 0 0 t 0 0 0 0 0 0 0 0.0 22.0 23.0 0.0 22.0 21.0 8.0 0 0

MA0850.1_rc_shift8 (FOXP3_rc)
; oligos_7nt_mkv5_m48 versus MA0850.1_rc (FOXP3_rc); m=18/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.462862; --------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 c 0 0 0 0 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 g 0 0 0 0 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 t 0 0 0 0 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0

MA0849.1_rc_shift8 (FOXO6_rc)
; oligos_7nt_mkv5_m48 versus MA0849.1_rc (FOXO6_rc); m=19/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.462257; --------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 c 0 0 0 0 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 g 0 0 0 0 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 t 0 0 0 0 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0

MA0905.1_rc_shift8 (HOXC10_rc)
; oligos_7nt_mkv5_m48 versus MA0905.1_rc (HOXC10_rc); m=20/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.453043; --------wtTTwAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1092.0 1069.0 187.0 102.0 1047.0 3211.0 24.0 152.0 c 0 0 0 0 0 0 0 0 453.0 532.0 86.0 5.0 4.0 0.0 3211.0 12.0 g 0 0 0 0 0 0 0 0 679.0 551.0 76.0 3.0 5.0 0.0 6.0 3211.0 t 0 0 0 0 0 0 0 0 988.0 3211.0 3211.0 3211.0 2165.0 27.0 2638.0 315.0

MA0899.1_rc_shift8 (HOXA10_rc)
; oligos_7nt_mkv5_m48 versus MA0899.1_rc (HOXA10_rc); m=21/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.450636; --------ttTTWATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2045.0 2058.0 331.0 384.0 2422.0 8381.0 267.0 957.0 c 0 0 0 0 0 0 0 0 1230.0 1560.0 125.0 76.0 121.0 0.0 718.0 1022.0 g 0 0 0 0 0 0 0 0 2089.0 2082.0 568.0 36.0 84.0 11.0 455.0 4516.0 t 0 0 0 0 0 0 0 0 3017.0 8381.0 8381.0 8381.0 5960.0 367.0 8381.0 8381.0

MA0911.1_rc_shift7 (Hoxa11_rc)
; oligos_7nt_mkv5_m48 versus MA0911.1_rc (Hoxa11_rc); m=22/35; ncol2=12; w=9; offset=2; strand=R; shift=7; score=0.450193; -------awtTTwAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 343.0 211.0 197.0 40.0 31.0 215.0 704.0 7.0 36.0 c 0 0 0 0 0 0 0 112.0 150.0 117.0 3.0 2.0 13.0 3.0 704.0 0.0 g 0 0 0 0 0 0 0 110.0 164.0 159.0 27.0 0.0 3.0 1.0 2.0 704.0 t 0 0 0 0 0 0 0 139.0 179.0 704.0 704.0 704.0 489.0 14.0 250.0 30.0

MA0485.2_rc_shift8 (HOXC9_rc)
; oligos_7nt_mkv5_m48 versus MA0485.2_rc (HOXC9_rc); m=23/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.440176; --------rTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5057.0 3541.0 0.0 0.0 2094.0 15541.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2191.0 1366.0 0.0 0.0 0.0 11.0 15541.0 0.0 g 0 0 0 0 0 0 0 0 5037.0 2033.0 12.0 0.0 0.0 5.0 0.0 15541.0 t 0 0 0 0 0 0 0 0 3256.0 15541.0 15541.0 15541.0 15541.0 5.0 4250.0 0.0

MA1503.1_rc_shift8 (HOXB9_rc)
; oligos_7nt_mkv5_m48 versus MA1503.1_rc (HOXB9_rc); m=24/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.435032; --------atTTTAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 706.0 486.0 17.0 0.0 462.0 1842.0 0.0 0.0 c 0 0 0 0 0 0 0 0 261.0 201.0 0.0 0.0 3.0 1.0 1842.0 0.0 g 0 0 0 0 0 0 0 0 458.0 295.0 42.0 0.0 12.0 0.0 6.0 1842.0 t 0 0 0 0 0 0 0 0 417.0 1842.0 1842.0 1842.0 1842.0 0.0 644.0 0.0

MA0907.1_rc_shift8 (HOXC13_rc)
; oligos_7nt_mkv5_m48 versus MA0907.1_rc (HOXC13_rc); m=25/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.434237; --------dTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 362.0 205.0 1.0 8.0 165.0 1257.0 4.0 132.0 c 0 0 0 0 0 0 0 0 147.0 89.0 0.0 2.0 2.0 5.0 1257.0 10.0 g 0 0 0 0 0 0 0 0 358.0 173.0 0.0 4.0 1.0 0.0 4.0 1257.0 t 0 0 0 0 0 0 0 0 389.0 1257.0 1257.0 1257.0 1257.0 0.0 251.0 26.0

MA0847.2_rc_shift7 (FOXD2_rc)
; oligos_7nt_mkv5_m48 versus MA0847.2_rc (FOXD2_rc); m=26/35; ncol2=13; w=9; offset=2; strand=R; shift=7; score=0.427217; -------wTRTTTAYw ; cor=; Ncor= a 0 0 0 0 0 0 0 2076.0 209.0 2297.0 33.0 11.0 11.0 5995.0 6.0 1553.0 c 0 0 0 0 0 0 0 515.0 125.0 0.0 25.0 17.0 11.0 0.0 5995.0 752.0 g 0 0 0 0 0 0 0 1003.0 53.0 5995.0 0.0 209.0 658.0 1005.0 101.0 1208.0 t 0 0 0 0 0 0 0 2400.0 5995.0 0.0 5995.0 5995.0 5995.0 148.0 2608.0 2482.0

MA0906.1_rc_shift8 (HOXC12_rc)
; oligos_7nt_mkv5_m48 versus MA0906.1_rc (HOXC12_rc); m=27/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.426756; --------dTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1344.0 515.0 29.0 25.0 553.0 4297.0 0.0 163.0 c 0 0 0 0 0 0 0 0 372.0 269.0 0.0 2.0 5.0 1.0 4297.0 12.0 g 0 0 0 0 0 0 0 0 1139.0 636.0 13.0 0.0 14.0 2.0 2.0 4297.0 t 0 0 0 0 0 0 0 0 1442.0 4297.0 4297.0 4297.0 4297.0 0.0 376.0 199.0

MA1506.1_rc_shift8 (HOXD10_rc)
; oligos_7nt_mkv5_m48 versus MA1506.1_rc (HOXD10_rc); m=28/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.424684; --------dTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1396.0 728.0 7.0 0.0 370.0 4645.0 0.0 0.0 c 0 0 0 0 0 0 0 0 483.0 262.0 0.0 0.0 18.0 151.0 4645.0 0.0 g 0 0 0 0 0 0 0 0 1450.0 463.0 36.0 0.0 0.0 0.0 1.0 4645.0 t 0 0 0 0 0 0 0 0 1316.0 4645.0 4645.0 4645.0 4645.0 0.0 1273.0 32.0

MA0873.1_rc_shift8 (HOXD12_rc)
; oligos_7nt_mkv5_m48 versus MA0873.1_rc (HOXD12_rc); m=29/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.424448; --------kTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 271.0 317.0 44.0 0.0 222.0 1367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 77.0 48.0 6.0 3.0 2.0 0.0 1367.0 5.0 g 0 0 0 0 0 0 0 0 482.0 185.0 0.0 0.0 0.0 10.0 2.0 1367.0 t 0 0 0 0 0 0 0 0 538.0 1367.0 1367.0 1367.0 1367.0 1.0 207.0 3.0

MA0650.2_rc_shift8 (HOXA13_rc)
; oligos_7nt_mkv5_m48 versus MA0650.2_rc (HOXA13_rc); m=30/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.41882; --------gTTTTATK ; cor=; Ncor= a 0 0 0 0 0 0 0 0 194.0 82.0 0.0 0.0 0.0 954.0 0.0 0.0 c 0 0 0 0 0 0 0 0 102.0 36.0 0.0 1.0 17.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 758.0 245.0 0.0 0.0 0.0 0.0 0.0 394.0 t 0 0 0 0 0 0 0 0 196.0 954.0 954.0 954.0 954.0 0.0 954.0 954.0

MA1473.1_rc_shift8 (CDX4_rc)
; oligos_7nt_mkv5_m48 versus MA1473.1_rc (CDX4_rc); m=31/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.414462; --------gtTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5441.0 4827.0 0.0 0.0 0.0 23367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 3758.0 2168.0 0.0 0.0 0.0 0.0 0.0 25.0 g 0 0 0 0 0 0 0 0 11454.0 6493.0 57.0 0.0 0.0 0.0 0.0 10976.0 t 0 0 0 0 0 0 0 0 2715.0 23367.0 23367.0 23367.0 23367.0 0.0 23367.0 12392.0

MA0757.1_rc_shift0 (ONECUT3_rc)
; oligos_7nt_mkv5_m48 versus MA0757.1_rc (ONECUT3_rc); m=32/35; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.412033; wtTATyGATTTTtt-- ; cor=; Ncor= a 2315.0 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 831.0 0 0 c 633.0 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 1388.0 0 0 g 1271.0 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 1022.0 0 0 t 1862.0 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 2839.0 0 0

MA0651.1_rc_shift8 (HOXC11_rc)
; oligos_7nt_mkv5_m48 versus MA0651.1_rc (HOXC11_rc); m=33/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.406289; --------dtTTWACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 741.0 776.0 22.0 42.0 676.0 2460.0 0.0 98.0 c 0 0 0 0 0 0 0 0 384.0 279.0 17.0 0.0 25.0 0.0 2460.0 12.0 g 0 0 0 0 0 0 0 0 628.0 431.0 43.0 0.0 6.0 0.0 0.0 2460.0 t 0 0 0 0 0 0 0 0 707.0 2460.0 2460.0 2460.0 1784.0 12.0 569.0 57.0

MA0878.2_rc_shift8 (CDX1_rc)
; oligos_7nt_mkv5_m48 versus MA0878.2_rc (CDX1_rc); m=34/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.403927; --------gtTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3829.0 3371.0 0.0 0.0 0.0 18998.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2693.0 1687.0 19.0 0.0 10.0 0.0 0.0 28.0 g 0 0 0 0 0 0 0 0 10693.0 7224.0 0.0 0.0 0.0 0.0 0.0 11785.0 t 0 0 0 0 0 0 0 0 1782.0 18998.0 18998.0 18998.0 18998.0 0.0 18998.0 7213.0

MA0756.1_rc_shift0 (ONECUT2_rc)
; oligos_7nt_mkv5_m48 versus MA0756.1_rc (ONECUT2_rc); m=35/35; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.40266; wwTATyGATTTttt-- ; cor=; Ncor= a 964.0 832.0 205.0 2378.0 22.0 0.0 5.0 2378.0 6.0 20.0 595.0 507.0 307.0 366.0 0 0 c 237.0 238.0 105.0 0.0 1.0 1485.0 0.0 9.0 18.0 114.0 83.0 375.0 515.0 539.0 0 0 g 526.0 576.0 84.0 14.0 2.0 16.0 2378.0 8.0 1.0 12.0 157.0 254.0 192.0 445.0 0 0 t 651.0 1547.0 2378.0 20.0 2378.0 893.0 6.0 8.0 2378.0 2378.0 2378.0 2378.0 1363.0 1028.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m48_shift5 (oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48)				; oligos_7nt_mkv5_m48 (oligos_7nt_mkv5_m48oligos_7nt_mkv5_m48); m=0 (reference); ncol1=11; shift=5; ncol=16; -----yyATTTTTAkm ; Alignment reference a 0 0 0 0 0 867 583 3587 150 183 114 250 205 3727 1044 1162 c 0 0 0 0 0 1193 1199 188 117 189 246 264 149 110 834 1224 g 0 0 0 0 0 1001 776 217 158 217 161 206 121 165 1225 781 t 0 0 0 0 0 1127 1630 196 3763 3599 3667 3468 3713 186 1085 1021
MA0773.1_rc_shift4 (MEF2D_rc)				; oligos_7nt_mkv5_m48 versus MA0773.1_rc (MEF2D_rc); m=1/35; ncol2=12; w=11; offset=-1; strand=R; shift=4; score=0.751462; ----kCTATTTwTAGh ; cor=; Ncor= a 0 0 0 0 585.0 5.0 0.0 5803.0 69.0 217.0 778.0 3021.0 6.0 5803.0 53.0 1642.0 c 0 0 0 0 70.0 5803.0 4.0 0.0 1.0 2.0 0.0 2.0 2.0 0.0 0.0 1933.0 g 0 0 0 0 2598.0 17.0 0.0 0.0 2.0 0.0 4.0 0.0 8.0 22.0 5803.0 109.0 t 0 0 0 0 3206.0 339.0 5803.0 0.0 5803.0 5803.0 5803.0 2782.0 5803.0 3.0 28.0 2120.0
MA0660.1_rc_shift4 (MEF2B_rc)				; oligos_7nt_mkv5_m48 versus MA0660.1_rc (MEF2B_rc); m=2/35; ncol2=12; w=11; offset=-1; strand=R; shift=4; score=0.73931; ----kCTATTTwTAGy ; cor=; Ncor= a 0 0 0 0 506.0 3.0 3.0 3150.0 45.0 143.0 710.0 1655.0 15.0 3150.0 12.0 505.0 c 0 0 0 0 99.0 3150.0 2.0 0.0 0.0 2.0 12.0 0.0 0.0 0.0 0.0 1766.0 g 0 0 0 0 2138.0 19.0 3.0 0.0 0.0 3.0 0.0 2.0 0.0 25.0 3150.0 72.0 t 0 0 0 0 1013.0 98.0 3150.0 0.0 3150.0 3150.0 3150.0 1495.0 3150.0 0.0 18.0 1385.0
MA0148.4_rc_shift5 (FOXA1_rc)				; oligos_7nt_mkv5_m48 versus MA0148.4_rc (FOXA1_rc); m=3/35; ncol2=12; w=11; offset=0; strand=R; shift=5; score=0.681714; -----whATGTTTACw ; cor=; Ncor= a 0 0 0 0 0 99726.0 85316.0 230183.0 6999.0 37659.0 3793.0 10719.0 5233.0 291718.0 11970.0 137954.0 c 0 0 0 0 0 70936.0 94376.0 27283.0 3226.0 4805.0 3652.0 3774.0 5243.0 6092.0 281612.0 53682.0 g 0 0 0 0 0 64037.0 60571.0 23038.0 3674.0 272943.0 2452.0 13410.0 14648.0 13932.0 5935.0 16071.0 t 0 0 0 0 0 88104.0 82540.0 42299.0 308904.0 7396.0 312906.0 294900.0 297679.0 11061.0 23286.0 115096.0
MA0052.4_rc_shift2 (MEF2A_rc)				; oligos_7nt_mkv5_m48 versus MA0052.4_rc (MEF2A_rc); m=4/35; ncol2=15; w=11; offset=-3; strand=R; shift=2; score=0.655479; --wwtCTATTTTTAgm ; cor=; Ncor= a 0 0 4617.0 4658.0 2809.0 1432.0 108.0 15157.0 831.0 1237.0 835.0 2167.0 1646.0 12325.0 2252.0 5676.0 c 0 0 2479.0 1810.0 1605.0 11104.0 422.0 215.0 202.0 241.0 506.0 610.0 1066.0 236.0 1007.0 4493.0 g 0 0 3812.0 3523.0 4039.0 1060.0 50.0 349.0 173.0 231.0 141.0 253.0 1013.0 2974.0 10919.0 1960.0 t 0 0 5254.0 6171.0 7709.0 2566.0 15582.0 441.0 14956.0 14453.0 14680.0 13132.0 12437.0 627.0 1984.0 4033.0
MA0497.1_rc_shift3 (MEF2C_rc)				; oligos_7nt_mkv5_m48 versus MA0497.1_rc (MEF2C_rc); m=5/35; ncol2=15; w=11; offset=-2; strand=R; shift=3; score=0.626445; ---wkCTATTTTTrgm ; cor=; Ncor= a 0 0 0 624.0 250.0 29.0 0.0 2091.0 70.0 76.0 15.0 230.0 263.0 1224.0 337.0 760.0 c 0 0 0 126.0 148.0 1671.0 32.0 0.0 4.0 2.0 87.0 241.0 74.0 0.0 78.0 822.0 g 0 0 0 450.0 836.0 120.0 0.0 62.0 0.0 0.0 0.0 32.0 256.0 985.0 1412.0 196.0 t 0 0 0 1009.0 975.0 389.0 2177.0 56.0 2135.0 2131.0 2107.0 1706.0 1616.0 0.0 382.0 431.0
MA1606.1_rc_shift6 (Foxf1_rc)				; oligos_7nt_mkv5_m48 versus MA1606.1_rc (Foxf1_rc); m=6/35; ncol2=11; w=10; offset=1; strand=R; shift=6; score=0.583655; ------ttTGTTTAyw ; cor=; Ncor= a 0 0 0 0 0 0 14658.0 13930.0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 26418.0 c 0 0 0 0 0 0 12844.0 14294.0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 8287.0 g 0 0 0 0 0 0 11715.0 12643.0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 7560.0 t 0 0 0 0 0 0 20323.0 18673.0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 17275.0
MA0031.1_rc_shift7 (FOXD1_rc)				; oligos_7nt_mkv5_m48 versus MA0031.1_rc (FOXD1_rc); m=7/35; ncol2=8; w=8; offset=2; strand=R; shift=7; score= 0.5235; -------wTGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 c 0 0 0 0 0 0 0 3.0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 g 0 0 0 0 0 0 0 2.0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 t 0 0 0 0 0 0 0 7.0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0
MA0613.1_rc_shift7 (FOXG1_rc)				; oligos_7nt_mkv5_m48 versus MA0613.1_rc (FOXG1_rc); m=8/35; ncol2=8; w=8; offset=2; strand=R; shift=7; score=0.512822; -------wTGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 333.0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 0 c 0 0 0 0 0 0 0 2.0 1.0 1.0 1.0 1.0 1.0 1.0 623.0 0 g 0 0 0 0 0 0 0 167.0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 0 0 0 0 498.0 997.0 1.0 997.0 997.0 997.0 1.0 374.0 0
MA0032.2_rc_shift7 (FOXC1_rc)				; oligos_7nt_mkv5_m48 versus MA0032.2_rc (FOXC1_rc); m=9/35; ncol2=11; w=9; offset=2; strand=R; shift=7; score=0.50722; -------wTrTTKAYw ; cor=; Ncor= a 0 0 0 0 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 c 0 0 0 0 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 g 0 0 0 0 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 t 0 0 0 0 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0
MA0901.2_rc_shift6 (HOXB13_rc)				; oligos_7nt_mkv5_m48 versus MA0901.2_rc (HOXB13_rc); m=10/35; ncol2=14; w=10; offset=1; strand=R; shift=6; score=0.493616; ------wwwTTTTATT ; cor=; Ncor= a 0 0 0 0 0 0 27987.0 27647.0 35955.0 4137.0 1252.0 1628.0 3496.0 77157.0 3031.0 7343.0 c 0 0 0 0 0 0 12165.0 11759.0 7376.0 1882.0 625.0 490.0 1083.0 586.0 1913.0 351.0 g 0 0 0 0 0 0 13391.0 13152.0 12415.0 2465.0 760.0 599.0 523.0 550.0 726.0 4611.0 t 0 0 0 0 0 0 25171.0 26156.0 22968.0 70230.0 76077.0 75997.0 73612.0 421.0 73044.0 66409.0
MA0845.1_rc_shift7 (FOXB1_rc)				; oligos_7nt_mkv5_m48 versus MA0845.1_rc (FOXB1_rc); m=11/35; ncol2=11; w=9; offset=2; strand=R; shift=7; score=0.49333; -------aTrTTKACw ; cor=; Ncor= a 0 0 0 0 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 c 0 0 0 0 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 g 0 0 0 0 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 t 0 0 0 0 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0
MA0033.2_rc_shift8 (FOXL1_rc)				; oligos_7nt_mkv5_m48 versus MA0033.2_rc (FOXL1_rc); m=12/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.489695; --------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 c 0 0 0 0 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 g 0 0 0 0 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 t 0 0 0 0 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0
MA0042.2_rc_shift8 (FOXI1_rc)				; oligos_7nt_mkv5_m48 versus MA0042.2_rc (FOXI1_rc); m=13/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.472286; --------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 c 0 0 0 0 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 g 0 0 0 0 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 t 0 0 0 0 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0
MA0913.2_rc_shift8 (HOXD9_rc)				; oligos_7nt_mkv5_m48 versus MA0913.2_rc (HOXD9_rc); m=14/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.469881; --------dTTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4241.0 2194.0 0.0 123.0 5445.0 16363.0 4.0 927.0 c 0 0 0 0 0 0 0 0 2169.0 1216.0 0.0 0.0 0.0 0.0 439.0 675.0 g 0 0 0 0 0 0 0 0 5804.0 2202.0 0.0 0.0 8.0 0.0 226.0 8643.0 t 0 0 0 0 0 0 0 0 4149.0 16363.0 16363.0 16363.0 16363.0 215.0 16363.0 16363.0
MA0848.1_rc_shift8 (FOXO4_rc)				; oligos_7nt_mkv5_m48 versus MA0848.1_rc (FOXO4_rc); m=15/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.469604; --------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 c 0 0 0 0 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 g 0 0 0 0 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 t 0 0 0 0 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0
MA0908.1_rc_shift8 (HOXD11_rc)				; oligos_7nt_mkv5_m48 versus MA0908.1_rc (HOXD11_rc); m=16/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.46677; --------wtTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 69.0 71.0 7.0 3.0 56.0 230.0 0.0 23.0 c 0 0 0 0 0 0 0 0 23.0 28.0 0.0 0.0 0.0 0.0 230.0 0.0 g 0 0 0 0 0 0 0 0 51.0 29.0 4.0 0.0 0.0 0.0 0.0 230.0 t 0 0 0 0 0 0 0 0 88.0 230.0 230.0 230.0 175.0 8.0 68.0 16.0
MA0087.1_shift7 (Sox5)				; oligos_7nt_mkv5_m48 versus MA0087.1 (Sox5); m=17/35; ncol2=7; w=7; offset=2; strand=D; shift=7; score=0.463534; -------ATTGTTw-- ; cor=; Ncor= a 0 0 0 0 0 0 0 23.0 0.0 0.0 1.0 0.0 1.0 8.0 0 0 c 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 3.0 0 0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 22.0 0.0 0.0 4.0 0 0 t 0 0 0 0 0 0 0 0.0 22.0 23.0 0.0 22.0 21.0 8.0 0 0
MA0850.1_rc_shift8 (FOXP3_rc)				; oligos_7nt_mkv5_m48 versus MA0850.1_rc (FOXP3_rc); m=18/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.462862; --------TGTTTAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 c 0 0 0 0 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 g 0 0 0 0 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 t 0 0 0 0 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0
MA0849.1_rc_shift8 (FOXO6_rc)				; oligos_7nt_mkv5_m48 versus MA0849.1_rc (FOXO6_rc); m=19/35; ncol2=7; w=7; offset=3; strand=R; shift=8; score=0.462257; --------TGTTTAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 c 0 0 0 0 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 g 0 0 0 0 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 t 0 0 0 0 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0
MA0905.1_rc_shift8 (HOXC10_rc)				; oligos_7nt_mkv5_m48 versus MA0905.1_rc (HOXC10_rc); m=20/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.453043; --------wtTTwAyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1092.0 1069.0 187.0 102.0 1047.0 3211.0 24.0 152.0 c 0 0 0 0 0 0 0 0 453.0 532.0 86.0 5.0 4.0 0.0 3211.0 12.0 g 0 0 0 0 0 0 0 0 679.0 551.0 76.0 3.0 5.0 0.0 6.0 3211.0 t 0 0 0 0 0 0 0 0 988.0 3211.0 3211.0 3211.0 2165.0 27.0 2638.0 315.0
MA0899.1_rc_shift8 (HOXA10_rc)				; oligos_7nt_mkv5_m48 versus MA0899.1_rc (HOXA10_rc); m=21/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.450636; --------ttTTWATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2045.0 2058.0 331.0 384.0 2422.0 8381.0 267.0 957.0 c 0 0 0 0 0 0 0 0 1230.0 1560.0 125.0 76.0 121.0 0.0 718.0 1022.0 g 0 0 0 0 0 0 0 0 2089.0 2082.0 568.0 36.0 84.0 11.0 455.0 4516.0 t 0 0 0 0 0 0 0 0 3017.0 8381.0 8381.0 8381.0 5960.0 367.0 8381.0 8381.0
MA0911.1_rc_shift7 (Hoxa11_rc)				; oligos_7nt_mkv5_m48 versus MA0911.1_rc (Hoxa11_rc); m=22/35; ncol2=12; w=9; offset=2; strand=R; shift=7; score=0.450193; -------awtTTwAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 343.0 211.0 197.0 40.0 31.0 215.0 704.0 7.0 36.0 c 0 0 0 0 0 0 0 112.0 150.0 117.0 3.0 2.0 13.0 3.0 704.0 0.0 g 0 0 0 0 0 0 0 110.0 164.0 159.0 27.0 0.0 3.0 1.0 2.0 704.0 t 0 0 0 0 0 0 0 139.0 179.0 704.0 704.0 704.0 489.0 14.0 250.0 30.0
MA0485.2_rc_shift8 (HOXC9_rc)				; oligos_7nt_mkv5_m48 versus MA0485.2_rc (HOXC9_rc); m=23/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.440176; --------rTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5057.0 3541.0 0.0 0.0 2094.0 15541.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2191.0 1366.0 0.0 0.0 0.0 11.0 15541.0 0.0 g 0 0 0 0 0 0 0 0 5037.0 2033.0 12.0 0.0 0.0 5.0 0.0 15541.0 t 0 0 0 0 0 0 0 0 3256.0 15541.0 15541.0 15541.0 15541.0 5.0 4250.0 0.0
MA1503.1_rc_shift8 (HOXB9_rc)				; oligos_7nt_mkv5_m48 versus MA1503.1_rc (HOXB9_rc); m=24/35; ncol2=10; w=8; offset=3; strand=R; shift=8; score=0.435032; --------atTTTAYG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 706.0 486.0 17.0 0.0 462.0 1842.0 0.0 0.0 c 0 0 0 0 0 0 0 0 261.0 201.0 0.0 0.0 3.0 1.0 1842.0 0.0 g 0 0 0 0 0 0 0 0 458.0 295.0 42.0 0.0 12.0 0.0 6.0 1842.0 t 0 0 0 0 0 0 0 0 417.0 1842.0 1842.0 1842.0 1842.0 0.0 644.0 0.0
MA0907.1_rc_shift8 (HOXC13_rc)				; oligos_7nt_mkv5_m48 versus MA0907.1_rc (HOXC13_rc); m=25/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.434237; --------dTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 362.0 205.0 1.0 8.0 165.0 1257.0 4.0 132.0 c 0 0 0 0 0 0 0 0 147.0 89.0 0.0 2.0 2.0 5.0 1257.0 10.0 g 0 0 0 0 0 0 0 0 358.0 173.0 0.0 4.0 1.0 0.0 4.0 1257.0 t 0 0 0 0 0 0 0 0 389.0 1257.0 1257.0 1257.0 1257.0 0.0 251.0 26.0
MA0847.2_rc_shift7 (FOXD2_rc)				; oligos_7nt_mkv5_m48 versus MA0847.2_rc (FOXD2_rc); m=26/35; ncol2=13; w=9; offset=2; strand=R; shift=7; score=0.427217; -------wTRTTTAYw ; cor=; Ncor= a 0 0 0 0 0 0 0 2076.0 209.0 2297.0 33.0 11.0 11.0 5995.0 6.0 1553.0 c 0 0 0 0 0 0 0 515.0 125.0 0.0 25.0 17.0 11.0 0.0 5995.0 752.0 g 0 0 0 0 0 0 0 1003.0 53.0 5995.0 0.0 209.0 658.0 1005.0 101.0 1208.0 t 0 0 0 0 0 0 0 2400.0 5995.0 0.0 5995.0 5995.0 5995.0 148.0 2608.0 2482.0
MA0906.1_rc_shift8 (HOXC12_rc)				; oligos_7nt_mkv5_m48 versus MA0906.1_rc (HOXC12_rc); m=27/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.426756; --------dTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1344.0 515.0 29.0 25.0 553.0 4297.0 0.0 163.0 c 0 0 0 0 0 0 0 0 372.0 269.0 0.0 2.0 5.0 1.0 4297.0 12.0 g 0 0 0 0 0 0 0 0 1139.0 636.0 13.0 0.0 14.0 2.0 2.0 4297.0 t 0 0 0 0 0 0 0 0 1442.0 4297.0 4297.0 4297.0 4297.0 0.0 376.0 199.0
MA1506.1_rc_shift8 (HOXD10_rc)				; oligos_7nt_mkv5_m48 versus MA1506.1_rc (HOXD10_rc); m=28/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.424684; --------dTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1396.0 728.0 7.0 0.0 370.0 4645.0 0.0 0.0 c 0 0 0 0 0 0 0 0 483.0 262.0 0.0 0.0 18.0 151.0 4645.0 0.0 g 0 0 0 0 0 0 0 0 1450.0 463.0 36.0 0.0 0.0 0.0 1.0 4645.0 t 0 0 0 0 0 0 0 0 1316.0 4645.0 4645.0 4645.0 4645.0 0.0 1273.0 32.0
MA0873.1_rc_shift8 (HOXD12_rc)				; oligos_7nt_mkv5_m48 versus MA0873.1_rc (HOXD12_rc); m=29/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.424448; --------kTTTTACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 271.0 317.0 44.0 0.0 222.0 1367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 77.0 48.0 6.0 3.0 2.0 0.0 1367.0 5.0 g 0 0 0 0 0 0 0 0 482.0 185.0 0.0 0.0 0.0 10.0 2.0 1367.0 t 0 0 0 0 0 0 0 0 538.0 1367.0 1367.0 1367.0 1367.0 1.0 207.0 3.0
MA0650.2_rc_shift8 (HOXA13_rc)				; oligos_7nt_mkv5_m48 versus MA0650.2_rc (HOXA13_rc); m=30/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.41882; --------gTTTTATK ; cor=; Ncor= a 0 0 0 0 0 0 0 0 194.0 82.0 0.0 0.0 0.0 954.0 0.0 0.0 c 0 0 0 0 0 0 0 0 102.0 36.0 0.0 1.0 17.0 0.0 0.0 0.0 g 0 0 0 0 0 0 0 0 758.0 245.0 0.0 0.0 0.0 0.0 0.0 394.0 t 0 0 0 0 0 0 0 0 196.0 954.0 954.0 954.0 954.0 0.0 954.0 954.0
MA1473.1_rc_shift8 (CDX4_rc)				; oligos_7nt_mkv5_m48 versus MA1473.1_rc (CDX4_rc); m=31/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.414462; --------gtTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5441.0 4827.0 0.0 0.0 0.0 23367.0 0.0 0.0 c 0 0 0 0 0 0 0 0 3758.0 2168.0 0.0 0.0 0.0 0.0 0.0 25.0 g 0 0 0 0 0 0 0 0 11454.0 6493.0 57.0 0.0 0.0 0.0 0.0 10976.0 t 0 0 0 0 0 0 0 0 2715.0 23367.0 23367.0 23367.0 23367.0 0.0 23367.0 12392.0
MA0757.1_rc_shift0 (ONECUT3_rc)				; oligos_7nt_mkv5_m48 versus MA0757.1_rc (ONECUT3_rc); m=32/35; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.412033; wtTATyGATTTTtt-- ; cor=; Ncor= a 2315.0 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 831.0 0 0 c 633.0 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 1388.0 0 0 g 1271.0 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 1022.0 0 0 t 1862.0 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 2839.0 0 0
MA0651.1_rc_shift8 (HOXC11_rc)				; oligos_7nt_mkv5_m48 versus MA0651.1_rc (HOXC11_rc); m=33/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.406289; --------dtTTWACG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 741.0 776.0 22.0 42.0 676.0 2460.0 0.0 98.0 c 0 0 0 0 0 0 0 0 384.0 279.0 17.0 0.0 25.0 0.0 2460.0 12.0 g 0 0 0 0 0 0 0 0 628.0 431.0 43.0 0.0 6.0 0.0 0.0 2460.0 t 0 0 0 0 0 0 0 0 707.0 2460.0 2460.0 2460.0 1784.0 12.0 569.0 57.0
MA0878.2_rc_shift8 (CDX1_rc)				; oligos_7nt_mkv5_m48 versus MA0878.2_rc (CDX1_rc); m=34/35; ncol2=11; w=8; offset=3; strand=R; shift=8; score=0.403927; --------gtTTTATk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3829.0 3371.0 0.0 0.0 0.0 18998.0 0.0 0.0 c 0 0 0 0 0 0 0 0 2693.0 1687.0 19.0 0.0 10.0 0.0 0.0 28.0 g 0 0 0 0 0 0 0 0 10693.0 7224.0 0.0 0.0 0.0 0.0 0.0 11785.0 t 0 0 0 0 0 0 0 0 1782.0 18998.0 18998.0 18998.0 18998.0 0.0 18998.0 7213.0
MA0756.1_rc_shift0 (ONECUT2_rc)				; oligos_7nt_mkv5_m48 versus MA0756.1_rc (ONECUT2_rc); m=35/35; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.40266; wwTATyGATTTttt-- ; cor=; Ncor= a 964.0 832.0 205.0 2378.0 22.0 0.0 5.0 2378.0 6.0 20.0 595.0 507.0 307.0 366.0 0 0 c 237.0 238.0 105.0 0.0 1.0 1485.0 0.0 9.0 18.0 114.0 83.0 375.0 515.0 539.0 0 0 g 526.0 576.0 84.0 14.0 2.0 16.0 2378.0 8.0 1.0 12.0 157.0 254.0 192.0 445.0 0 0 t 651.0 1547.0 2378.0 20.0 2378.0 893.0 6.0 8.0 2378.0 2378.0 2378.0 2378.0 1363.0 1028.0 0 0