Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf
		file1	1	13	3969
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m5 MA0499.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 MYOD1 0.937 0.937 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m5 MA0745.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 SNAI2 0.915 0.915 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m5 MA0830.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TCF4 0.822 0.822 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m5 MA1620.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Ptf1a(var.3) 0.868 0.801 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_7nt_mkv5_m5 MA1621.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Rbpjl 0.861 0.800 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_7nt_mkv5_m5 MA1631.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 ASCL1(var.2) 0.795 0.795 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m5 MA0521.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Tcf12 0.868 0.734 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_7nt_mkv5_m5 MA0500.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 MYOG 0.775 0.716 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_7nt_mkv5_m5 MA1105.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 GRHL2 0.774 0.714 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv5_m5 MA1641.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 MYF5 0.773 0.713 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_7nt_mkv5_m5 MA1619.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Ptf1a(var.2) 0.772 0.713 13 12 12 13 0.9231 0.9231 1.0000 R 1
oligos_7nt_mkv5_m5 MA0832.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Tcf21 0.767 0.713 13 14 13 14 0.9286 1.0000 0.9286 D 0
oligos_7nt_mkv5_m5 MA1642.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 NEUROG2(var.2) 0.712 0.712 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 MA1559.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 SNAI3 0.922 0.709 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA0744.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 SCRT2 0.867 0.704 13 16 13 16 0.8125 1.0000 0.8125 D -3
oligos_7nt_mkv5_m5 MA0743.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 SCRT1 0.858 0.697 13 16 13 16 0.8125 1.0000 0.8125 D -3
oligos_7nt_mkv5_m5 MA0103.3 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 ZEB1 0.801 0.677 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_7nt_mkv5_m5 MA1485.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 FERD3L 0.724 0.673 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_7nt_mkv5_m5 MA0820.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 FIGLA 0.871 0.670 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_7nt_mkv5_m5 MA1558.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 SNAI1 0.849 0.653 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA1618.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Ptf1a 0.748 0.641 13 13 12 14 0.8571 0.9231 0.9231 D 1
oligos_7nt_mkv5_m5 MA1648.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TCF12(var.2) 0.755 0.639 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_7nt_mkv5_m5 MA0522.3 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TCF3 0.745 0.630 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_7nt_mkv5_m5 MA0665.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 MSC 0.808 0.622 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_7nt_mkv5_m5 MA0816.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Ascl2 0.807 0.621 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA1467.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 ATOH1(var.2) 0.805 0.619 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA1472.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 BHLHA15(var.2) 0.798 0.614 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA1109.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 NEUROD1 0.714 0.612 13 13 12 14 0.8571 0.9231 0.9231 D 1
oligos_7nt_mkv5_m5 MA1100.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 ASCL1 0.794 0.611 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA0667.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 MYF6 0.784 0.603 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_7nt_mkv5_m5 MA0691.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TFAP4 0.769 0.591 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA1493.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 HES6 0.764 0.588 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_7nt_mkv5_m5 MA0819.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 CLOCK 0.740 0.569 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA0091.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TAL1::TCF3 0.720 0.566 13 12 11 14 0.7857 0.8462 0.9167 R 2
oligos_7nt_mkv5_m5 MA1635.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 BHLHE22(var.2) 0.733 0.564 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA0048.2 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 NHLH1 0.727 0.560 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_7nt_mkv5_m5 MA1570.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TFAP4(var.2) 0.717 0.552 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA1638.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 HAND2 0.715 0.550 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_7nt_mkv5_m5 MA0626.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Npas2 0.714 0.549 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_7nt_mkv5_m5 MA0807.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TBX5 0.775 0.477 13 8 8 13 0.6154 0.6154 1.0000 D 5
oligos_7nt_mkv5_m5 MA0806.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TBX4 0.769 0.473 13 8 8 13 0.6154 0.6154 1.0000 D 5
oligos_7nt_mkv5_m5 MA0622.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Mlxip 0.741 0.456 13 8 8 13 0.6154 0.6154 1.0000 R 3
oligos_7nt_mkv5_m5 MA0803.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TBX15 0.727 0.448 13 8 8 13 0.6154 0.6154 1.0000 D 5
oligos_7nt_mkv5_m5 MA0480.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 Foxo1 0.724 0.434 13 11 9 15 0.6000 0.6923 0.8182 R -2
oligos_7nt_mkv5_m5 MA0805.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 TBX1 0.704 0.433 13 8 8 13 0.6154 0.6154 1.0000 D 5
oligos_7nt_mkv5_m5 MA1647.1 oligos_7nt_mkv5_m5oligos_7nt_mkv5_m5 PRDM4 0.722 0.433 13 11 9 15 0.6000 0.6923 0.8182 R -2 
 Host name	pedagogix
 Job started	2020-04-14.154435
 Job done	2020-04-14.154533
 Seconds	9.26
	user	9.26
	system	1.17
	cuser	44.46
;	csystem	2.45