Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6.tf
		file1	1	13	4492
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m6 MA1631.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 ASCL1(var.2) 0.927 0.927 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m6 MA0830.2 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TCF4 0.913 0.913 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m6 MA0745.2 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 SNAI2 0.800 0.800 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m6 MA1648.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TCF12(var.2) 0.930 0.787 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv5_m6 MA0522.3 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TCF3 0.924 0.782 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv5_m6 MA0499.2 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 MYOD1 0.779 0.779 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m6 MA0103.3 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 ZEB1 0.876 0.741 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_7nt_mkv5_m6 MA1621.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 Rbpjl 0.795 0.739 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_7nt_mkv5_m6 MA1620.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 Ptf1a(var.3) 0.790 0.729 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv5_m6 MA1558.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 SNAI1 0.908 0.699 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv5_m6 MA0500.2 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 MYOG 0.746 0.689 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv5_m6 MA1559.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 SNAI3 0.887 0.682 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv5_m6 MA0521.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 Tcf12 0.761 0.644 13 11 11 13 0.8462 0.8462 1.0000 R 0
oligos_7nt_mkv5_m6 MA0820.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 FIGLA 0.816 0.628 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv5_m6 MA1100.2 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 ASCL1 0.812 0.624 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv5_m6 MA0744.2 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 SCRT2 0.756 0.614 13 16 13 16 0.8125 1.0000 0.8125 R 0
oligos_7nt_mkv5_m6 MA0816.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 Ascl2 0.794 0.611 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv5_m6 MA0743.2 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 SCRT1 0.748 0.608 13 16 13 16 0.8125 1.0000 0.8125 R 0
oligos_7nt_mkv5_m6 MA0048.2 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 NHLH1 0.788 0.606 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv5_m6 MA1628.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 Zic1::Zic2 0.823 0.588 13 11 10 14 0.7143 0.7692 0.9091 R 3
oligos_7nt_mkv5_m6 MA1472.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 BHLHA15(var.2) 0.726 0.559 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv5_m6 MA1560.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 SOHLH2 0.724 0.557 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv5_m6 MA0825.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 MNT 0.715 0.550 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_7nt_mkv5_m6 MA1635.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 BHLHE22(var.2) 0.709 0.545 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv5_m6 MA0058.3 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 MAX 0.707 0.544 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_7nt_mkv5_m6 MA1629.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 Zic2 0.789 0.543 13 14 11 16 0.6875 0.8462 0.7857 R 2
oligos_7nt_mkv5_m6 MA1585.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 ZKSCAN1 0.701 0.539 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_7nt_mkv5_m6 MA0807.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TBX5 0.822 0.506 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv5_m6 MA1529.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 NHLH2 0.700 0.506 13 18 13 18 0.7222 1.0000 0.7222 R -3
oligos_7nt_mkv5_m6 MA0806.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TBX4 0.808 0.497 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv5_m6 MA0803.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TBX15 0.771 0.475 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv5_m6 MA0805.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TBX1 0.749 0.461 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv5_m6 MA1567.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TBX6 0.713 0.458 13 10 9 14 0.6429 0.6923 0.9000 R -1
oligos_7nt_mkv5_m6 MA0801.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 MGA 0.736 0.453 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv5_m6 MA0622.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 Mlxip 0.718 0.442 13 8 8 13 0.6154 0.6154 1.0000 R 2
oligos_7nt_mkv5_m6 MA0802.1 oligos_7nt_mkv5_m6oligos_7nt_mkv5_m6 TBR1 0.766 0.409 13 10 8 15 0.5333 0.6154 0.8000 R -2 
 Host name	pedagogix
 Job started	2020-04-14.154533
 Job done	2020-04-14.154629
 Seconds	8.45
	user	8.45
	system	0.87
	cuser	44
;	csystem	2.09