One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m1/peak-motifs_oligos_8nt_mkv6_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m1/peak-motifs_oligos_8nt_mkv6_m1_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m1_shift1 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv6_m1_shift1 (oligos_8nt_mkv6_m1oligos_8nt_mkv6_m1)     
; oligos_8nt_mkv6_m1 (oligos_8nt_mkv6_m1oligos_8nt_mkv6_m1); m=0 (reference); ncol1=12; shift=1; ncol=14; -sgCGCAGGCGss-
; Alignment reference
a	0	444	522	5	8	111	2639	72	94	3	5	344	812	0
c	0	1407	951	3817	17	3245	480	500	214	3845	35	1863	1162	0
g	0	1293	2048	48	3844	437	704	3085	3494	16	3831	1216	1488	0
t	0	729	352	3	4	80	50	216	71	9	2	450	411	0
MA0506.1_rc_shift1 (NRF1_rc) 
; oligos_8nt_mkv6_m1 versus MA0506.1_rc (NRF1_rc); m=1/5; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.833578; -yGCGCAkGCGC--
; cor=; Ncor=
a	0	0.0	0.0	0.0	286.0	0.0	3693.0	313.0	140.0	0.0	0.0	0.0	0	0
c	0	1575.0	0.0	4275.0	0.0	4624.0	528.0	935.0	468.0	4239.0	0.0	3647.0	0	0
g	0	804.0	4550.0	349.0	4338.0	0.0	403.0	1862.0	4016.0	189.0	4001.0	375.0	0	0
t	0	2245.0	74.0	0.0	0.0	0.0	0.0	1514.0	0.0	196.0	623.0	602.0	0	0
MA1648.1_rc_shift2 (TCF12(var.2)_rc) 
; oligos_8nt_mkv6_m1 versus MA1648.1_rc (TCF12(var.2)_rc); m=2/5; ncol2=11; w=11; offset=1; strand=R; shift=2; score=0.655274; --srGCAGGTGss-
; cor=; Ncor=
a	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0	0
c	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0	0
g	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0	0
t	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0	0
MA0472.2_rc_shift1 (EGR2_rc) 
; oligos_8nt_mkv6_m1 versus MA0472.2_rc (EGR2_rc); m=3/5; ncol2=11; w=11; offset=0; strand=R; shift=1; score=0.647888; -tGCGTGGGCGk--
; cor=; Ncor=
a	0	430.0	115.0	171.0	23.0	2.0	277.0	13.0	29.0	222.0	73.0	142.0	0	0
c	0	542.0	20.0	4034.0	2.0	26.0	38.0	15.0	25.0	3731.0	28.0	94.0	0	0
g	0	157.0	1585.0	0.0	1573.0	110.0	1468.0	1554.0	1558.0	0.0	1551.0	679.0	0	0
t	0	1731.0	4.0	106.0	0.0	2147.0	0.0	24.0	6.0	295.0	0.0	1157.0	0	0
MA0522.3_rc_shift2 (TCF3_rc) 
; oligos_8nt_mkv6_m1 versus MA0522.3_rc (TCF3_rc); m=4/5; ncol2=11; w=11; offset=1; strand=R; shift=2; score=0.647442; --ssGCAGGTGbs-
; cor=; Ncor=
a	0	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0	0
c	0	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0	0
g	0	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0	0
t	0	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0	0
MA0162.4_rc_shift0 (EGR1_rc) 
; oligos_8nt_mkv6_m1 versus MA0162.4_rc (EGR1_rc); m=5/5; ncol2=14; w=12; offset=-1; strand=R; shift=0; score=0.60491; skGcGTGGGCGkgg
; cor=; Ncor=
a	5251.0	4909.0	2276.0	2552.0	239.0	759.0	628.0	382.0	368.0	2120.0	797.0	1933.0	4641.0	5280.0
c	7852.0	6345.0	2157.0	20544.0	699.0	2122.0	698.0	1455.0	665.0	22237.0	756.0	3854.0	7211.0	6621.0
g	13686.0	10441.0	25196.0	2806.0	29507.0	5420.0	28958.0	27321.0	29338.0	1131.0	28403.0	10303.0	14749.0	11610.0
t	3809.0	8903.0	969.0	4696.0	153.0	22297.0	314.0	1440.0	227.0	5110.0	642.0	14508.0	3997.0	7087.0