One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m10/peak-motifs_oligos_8nt_mkv6_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m10/peak-motifs_oligos_8nt_mkv6_m10_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m10_shift4 ; 15 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv6_m10_shift4 (oligos_8nt_mkv6_m10oligos_8nt_mkv6_m10)     
; oligos_8nt_mkv6_m10 (oligos_8nt_mkv6_m10oligos_8nt_mkv6_m10); m=0 (reference); ncol1=12; shift=4; ncol=16; ----sgCGGGGGGCGs
; Alignment reference
a	0	0	0	0	387	299	1	0	44	61	73	56	67	15	138	290
c	0	0	0	0	1163	677	2822	104	485	414	535	409	64	2780	544	755
g	0	0	0	0	956	1540	10	2730	2259	2311	2192	2335	2657	18	1993	1482
t	0	0	0	0	328	318	1	0	46	48	34	34	46	21	159	307
MA1102.2_shift4 (CTCFL) 
; oligos_8nt_mkv6_m10 versus MA1102.2 (CTCFL); m=1/14; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.771413; ----rsCAGGGGGCgs
; cor=; Ncor=
a	0	0	0	0	5825.0	2659.0	1301.0	17270.0	86.0	684.0	349.0	193.0	351.0	181.0	4166.0	1771.0
c	0	0	0	0	4180.0	7033.0	12867.0	413.0	481.0	600.0	1141.0	767.0	270.0	17593.0	3015.0	7727.0
g	0	0	0	0	4844.0	7094.0	2033.0	329.0	17285.0	16511.0	15425.0	16819.0	17001.0	68.0	9299.0	6341.0
t	0	0	0	0	3188.0	1251.0	1836.0	25.0	185.0	242.0	1122.0	258.0	415.0	195.0	1557.0	2198.0
MA1578.1_rc_shift3 (VEZF1_rc) 
; oligos_8nt_mkv6_m10 versus MA1578.1_rc (VEZF1_rc); m=2/14; ncol2=10; w=9; offset=-1; strand=R; shift=3; score=0.557719; ---warkGGGGGG---
; cor=; Ncor=
a	0	0	0	339.0	377.0	334.0	125.0	8.0	4.0	0.0	0.0	0.0	0.0	0	0	0
c	0	0	0	152.0	211.0	70.0	110.0	3.0	0.0	0.0	0.0	0.0	137.0	0	0	0
g	0	0	0	173.0	171.0	550.0	357.0	977.0	989.0	997.0	995.0	997.0	790.0	0	0	0
t	0	0	0	333.0	240.0	44.0	406.0	10.0	6.0	2.0	4.0	1.0	71.0	0	0	0
MA1584.1_rc_shift0 (ZIC5_rc) 
; oligos_8nt_mkv6_m10 versus MA1584.1_rc (ZIC5_rc); m=3/14; ncol2=16; w=12; offset=-4; strand=R; shift=0; score=0.556148; kCrCaGCGGGGGGTck
; cor=; Ncor=
a	5356.0	2756.0	10267.0	2.0	18007.0	5843.0	23.0	3577.0	2.0	1.0	328.0	57.0	17.0	0.0	5687.0	3106.0
c	792.0	19961.0	1725.0	21153.0	3252.0	235.0	20412.0	0.0	2.0	0.0	470.0	58.0	0.0	2765.0	17329.0	5212.0
g	11606.0	1733.0	9445.0	8.0	3844.0	19607.0	21.0	17685.0	21235.0	21263.0	20221.0	21163.0	21201.0	2320.0	3318.0	6877.0
t	8073.0	52.0	5255.0	251.0	2536.0	2.0	2110.0	10.0	67.0	5.0	1311.0	147.0	250.0	19266.0	555.0	6068.0
MA0736.1_rc_shift1 (GLIS2_rc) 
; oligos_8nt_mkv6_m10 versus MA0736.1_rc (GLIS2_rc); m=4/14; ncol2=14; w=11; offset=-3; strand=R; shift=1; score=0.547036; -CktyGyGGGGGGTm-
; cor=; Ncor=
a	0	63.0	197.0	228.0	64.0	69.0	50.0	99.0	4.0	0.0	14.0	1.0	5.0	1.0	439.0	0
c	0	1051.0	112.0	234.0	909.0	28.0	915.0	1.0	0.0	0.0	0.0	0.0	3.0	130.0	929.0	0
g	0	187.0	265.0	16.0	36.0	1080.0	12.0	1056.0	1061.0	1087.0	1074.0	1074.0	1072.0	94.0	179.0	0
t	0	15.0	407.0	484.0	459.0	3.0	412.0	52.0	56.0	2.0	7.0	4.0	3.0	813.0	74.0	0
MA1596.1_rc_shift4 (ZNF460_rc) 
; oligos_8nt_mkv6_m10 versus MA1596.1_rc (ZNF460_rc); m=5/14; ncol2=16; w=12; offset=0; strand=R; shift=4; score=0.541667; ----CyyGGGAGGCkG
; cor=; Ncor=
a	0	0	0	0	64.0	29.0	56.0	40.0	9.0	10.0	1570.0	6.0	11.0	35.0	85.0	29.0
c	0	0	0	0	1147.0	421.0	930.0	27.0	15.0	15.0	17.0	9.0	7.0	1493.0	181.0	47.0
g	0	0	0	0	158.0	175.0	110.0	1533.0	1583.0	1584.0	12.0	1596.0	1588.0	23.0	495.0	1519.0
t	0	0	0	0	243.0	987.0	516.0	12.0	5.0	3.0	13.0	1.0	6.0	61.0	851.0	17.0
MA0696.1_rc_shift1 (ZIC1_rc) 
; oligos_8nt_mkv6_m10 versus MA0696.1_rc (ZIC1_rc); m=6/14; ncol2=14; w=11; offset=-3; strand=R; shift=1; score=0.539633; -CrCAGCrGGGGGTc-
; cor=; Ncor=
a	0	2725.0	16190.0	1.0	27084.0	6735.0	14.0	10313.0	14.0	7.0	927.0	281.0	125.0	23.0	8960.0	0
c	0	34431.0	1690.0	34649.0	5531.0	439.0	31995.0	0.0	10.0	4.0	327.0	204.0	58.0	7408.0	25702.0	0
g	0	520.0	7693.0	24.0	1757.0	27426.0	45.0	18412.0	29532.0	29399.0	25527.0	29217.0	28949.0	2660.0	3934.0	0
t	0	35.0	3121.0	73.0	1215.0	23.0	2156.0	22.0	185.0	0.0	2606.0	1264.0	836.0	22722.0	1113.0	0
MA0751.1_rc_shift0 (ZIC4_rc) 
; oligos_8nt_mkv6_m10 versus MA0751.1_rc (ZIC4_rc); m=7/14; ncol2=15; w=11; offset=-4; strand=R; shift=0; score=0.534788; dCrCmrCrGGGGGym-
; cor=; Ncor=
a	916.0	1156.0	1454.0	67.0	3488.0	1017.0	69.0	1078.0	11.0	1.0	275.0	147.0	98.0	21.0	1887.0	0
c	363.0	4522.0	599.0	5086.0	1903.0	252.0	4795.0	6.0	0.0	0.0	225.0	121.0	52.0	1553.0	4126.0	0
g	1224.0	452.0	1044.0	18.0	865.0	2279.0	68.0	2222.0	2985.0	2999.0	2757.0	2890.0	2870.0	812.0	934.0	0
t	1083.0	74.0	704.0	258.0	1052.0	24.0	1095.0	24.0	114.0	8.0	614.0	209.0	315.0	3013.0	578.0	0
MA0697.1_rc_shift0 (ZIC3_rc) 
; oligos_8nt_mkv6_m10 versus MA0697.1_rc (ZIC3_rc); m=8/14; ncol2=15; w=11; offset=-4; strand=R; shift=0; score=0.521843; dCrCaGCRGGGGGTc-
; cor=; Ncor=
a	53.0	23.0	74.0	3.0	163.0	29.0	2.0	61.0	0.0	0.0	19.0	7.0	4.0	0.0	69.0	0
c	13.0	214.0	13.0	225.0	53.0	6.0	217.0	0.0	0.0	0.0	0.0	3.0	0.0	43.0	163.0	0
g	79.0	2.0	89.0	0.0	26.0	178.0	5.0	142.0	206.0	209.0	188.0	204.0	203.0	32.0	50.0	0
t	56.0	3.0	24.0	3.0	18.0	4.0	22.0	0.0	0.0	0.0	22.0	7.0	7.0	163.0	20.0	0
MA1564.1_rc_shift7 (SP9_rc) 
; oligos_8nt_mkv6_m10 versus MA1564.1_rc (SP9_rc); m=9/14; ncol2=12; w=9; offset=3; strand=R; shift=7; score=0.492588; -------rgkGGGCGk
; cor=; Ncor=
a	0	0	0	0	0	0	0	660.0	588.0	353.0	412.0	30.0	14.0	173.0	9.0	96.0
c	0	0	0	0	0	0	0	204.0	191.0	38.0	24.0	0.0	0.0	2451.0	17.0	56.0
g	0	0	0	0	0	0	0	1167.0	1863.0	1259.0	2451.0	2451.0	2451.0	200.0	2451.0	1127.0
t	0	0	0	0	0	0	0	420.0	188.0	1192.0	39.0	0.0	22.0	211.0	2.0	2451.0
MA1513.1_rc_shift8 (KLF15_rc) 
; oligos_8nt_mkv6_m10 versus MA1513.1_rc (KLF15_rc); m=10/14; ncol2=11; w=8; offset=4; strand=R; shift=8; score=0.484782; --------sgGGGCGG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	2165.0	1602.0	3.0	1.0	11.0	0.0	0.0	3.0
c	0	0	0	0	0	0	0	0	3124.0	1934.0	100.0	359.0	2.0	11369.0	1.0	333.0
g	0	0	0	0	0	0	0	0	5013.0	6267.0	11254.0	10954.0	11345.0	0.0	11368.0	10940.0
t	0	0	0	0	0	0	0	0	1067.0	1566.0	12.0	55.0	11.0	0.0	0.0	93.0
MA0741.1_rc_shift8 (KLF16_rc) 
; oligos_8nt_mkv6_m10 versus MA0741.1_rc (KLF16_rc); m=11/14; ncol2=11; w=8; offset=4; strand=R; shift=8; score=0.460042; --------GKGGGcGK
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	370.0	40.0	97.0	0.0	0.0	403.0	19.0	0.0
c	0	0	0	0	0	0	0	0	23.0	19.0	3.0	8.0	0.0	1612.0	17.0	32.0
g	0	0	0	0	0	0	0	0	1612.0	1175.0	1612.0	1612.0	1612.0	173.0	1612.0	461.0
t	0	0	0	0	0	0	0	0	32.0	437.0	16.0	2.0	8.0	497.0	66.0	1150.0
MA0746.2_rc_shift7 (SP3_rc) 
; oligos_8nt_mkv6_m10 versus MA0746.2_rc (SP3_rc); m=12/14; ncol2=13; w=9; offset=3; strand=R; shift=7; score=0.440012; -------rGkGGGCGT
; cor=; Ncor=
a	0	0	0	0	0	0	0	1943.0	1475.0	552.0	718.0	9.0	0.0	504.0	12.0	11.0
c	0	0	0	0	0	0	0	524.0	297.0	39.0	2.0	0.0	0.0	6591.0	0.0	2.0
g	0	0	0	0	0	0	0	2608.0	5116.0	3160.0	6591.0	6591.0	6591.0	0.0	6591.0	1338.0
t	0	0	0	0	0	0	0	1516.0	556.0	3430.0	2.0	0.0	0.0	465.0	6.0	5253.0
MA0747.1_rc_shift7 (SP8_rc) 
; oligos_8nt_mkv6_m10 versus MA0747.1_rc (SP8_rc); m=13/14; ncol2=12; w=9; offset=3; strand=R; shift=7; score=0.436662; -------rGkGGGcGT
; cor=; Ncor=
a	0	0	0	0	0	0	0	82.0	39.0	3.0	15.0	0.0	2.0	39.0	5.0	2.0
c	0	0	0	0	0	0	0	1.0	21.0	6.0	4.0	3.0	6.0	167.0	1.0	1.0
g	0	0	0	0	0	0	0	52.0	167.0	77.0	167.0	167.0	167.0	37.0	167.0	33.0
t	0	0	0	0	0	0	0	31.0	13.0	90.0	0.0	2.0	5.0	25.0	7.0	133.0
MA1512.1_rc_shift8 (KLF11_rc) 
; oligos_8nt_mkv6_m10 versus MA1512.1_rc (KLF11_rc); m=14/14; ncol2=11; w=8; offset=4; strand=R; shift=8; score=0.427937; --------GkGGGCGT
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	1281.0	761.0	885.0	7.0	23.0	349.0	38.0	27.0
c	0	0	0	0	0	0	0	0	358.0	69.0	4.0	20.0	18.0	8291.0	0.0	115.0
g	0	0	0	0	0	0	0	0	8403.0	4226.0	8941.0	9166.0	9161.0	52.0	9142.0	1289.0
t	0	0	0	0	0	0	0	0	581.0	4689.0	0.0	1.0	11.0	2426.0	0.0	8655.0