One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m14/peak-motifs_oligos_8nt_mkv6_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m14/peak-motifs_oligos_8nt_mkv6_m14_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m14_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m14_shift0 (oligos_8nt_mkv6_m14oligos_8nt_mkv6_m14)
; oligos_8nt_mkv6_m14 (oligos_8nt_mkv6_m14oligos_8nt_mkv6_m14); m=0 (reference); ncol1=12; shift=0; ncol=13; ssCACAGCTCss- ; Alignment reference a 294 342 15 1413 3 1319 15 29 1 27 294 246 0 c 487 500 1428 4 1438 83 23 1418 23 1451 466 409 0 g 412 379 15 64 10 79 1418 19 51 2 379 591 0 t 289 261 24 1 31 1 26 16 1407 2 343 236 0

MA1619.1_shift1 (Ptf1a(var.2))
; oligos_8nt_mkv6_m14 versus MA1619.1 (Ptf1a(var.2)); m=1/4; ncol2=12; w=11; offset=1; strand=D; shift=1; score=0.601696; -rmaCAGCTGtky ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0

MA1641.1_shift1 (MYF5)
; oligos_8nt_mkv6_m14 versus MA1641.1 (MYF5); m=2/4; ncol2=12; w=11; offset=1; strand=D; shift=1; score=0.594748; -gvaCAGCTGtbc ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA0803.1_rc_shift1 (TBX15_rc)
; oligos_8nt_mkv6_m14 versus MA0803.1_rc (TBX15_rc); m=3/4; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.482076; -TCACACCT---- ; cor=; Ncor= a 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 c 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 g 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 t 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0

MA0805.1_rc_shift1 (TBX1_rc)
; oligos_8nt_mkv6_m14 versus MA0805.1_rc (TBX1_rc); m=4/4; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.467781; -TCACACCT---- ; cor=; Ncor= a 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 c 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 g 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 t 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m14_shift0 (oligos_8nt_mkv6_m14oligos_8nt_mkv6_m14)				; oligos_8nt_mkv6_m14 (oligos_8nt_mkv6_m14oligos_8nt_mkv6_m14); m=0 (reference); ncol1=12; shift=0; ncol=13; ssCACAGCTCss- ; Alignment reference a 294 342 15 1413 3 1319 15 29 1 27 294 246 0 c 487 500 1428 4 1438 83 23 1418 23 1451 466 409 0 g 412 379 15 64 10 79 1418 19 51 2 379 591 0 t 289 261 24 1 31 1 26 16 1407 2 343 236 0
MA1619.1_shift1 (Ptf1a(var.2))				; oligos_8nt_mkv6_m14 versus MA1619.1 (Ptf1a(var.2)); m=1/4; ncol2=12; w=11; offset=1; strand=D; shift=1; score=0.601696; -rmaCAGCTGtky ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0
MA1641.1_shift1 (MYF5)				; oligos_8nt_mkv6_m14 versus MA1641.1 (MYF5); m=2/4; ncol2=12; w=11; offset=1; strand=D; shift=1; score=0.594748; -gvaCAGCTGtbc ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0
MA0803.1_rc_shift1 (TBX15_rc)				; oligos_8nt_mkv6_m14 versus MA0803.1_rc (TBX15_rc); m=3/4; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.482076; -TCACACCT---- ; cor=; Ncor= a 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 0 c 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 0 g 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 0 t 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0 0
MA0805.1_rc_shift1 (TBX1_rc)				; oligos_8nt_mkv6_m14 versus MA0805.1_rc (TBX1_rc); m=4/4; ncol2=8; w=8; offset=1; strand=R; shift=1; score=0.467781; -TCACACCT---- ; cor=; Ncor= a 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 0 c 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 0 g 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 0 t 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0 0