One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m15/peak-motifs_oligos_8nt_mkv6_m15.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m15/peak-motifs_oligos_8nt_mkv6_m15_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m15_shift6 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m15_shift6 (oligos_8nt_mkv6_m15oligos_8nt_mkv6_m15)
; oligos_8nt_mkv6_m15 (oligos_8nt_mkv6_m15oligos_8nt_mkv6_m15); m=0 (reference); ncol1=12; shift=6; ncol=18; ------ssCACAGGTCss ; Alignment reference a 0 0 0 0 0 0 214 230 29 911 18 880 16 29 7 29 216 141 c 0 0 0 0 0 0 311 295 908 25 933 47 106 4 6 955 344 309 g 0 0 0 0 0 0 299 269 41 70 33 75 849 960 13 12 275 342 t 0 0 0 0 0 0 185 215 31 3 25 7 38 16 983 13 174 217

MA0745.2_rc_shift6 (SNAI2_rc)
; oligos_8nt_mkv6_m15 versus MA0745.2_rc (SNAI2_rc); m=1/8; ncol2=13; w=12; offset=0; strand=R; shift=6; score=0.649451; ------rykACAGGTGcr ; cor=; Ncor= a 0 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 c 0 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 g 0 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 t 0 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0

MA1620.1_rc_shift7 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv6_m15 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=2/8; ncol2=12; w=11; offset=1; strand=R; shift=7; score=0.594099; -------rmaCAGGTGtk ; cor=; Ncor= a 0 0 0 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 c 0 0 0 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 g 0 0 0 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 t 0 0 0 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0

MA1494.1_shift3 (HNF4A(var.2))
; oligos_8nt_mkv6_m15 versus MA1494.1 (HNF4A(var.2)); m=3/8; ncol2=15; w=12; offset=-3; strand=D; shift=3; score=0.574785; ---rrGTCCAAAGGTCRm ; cor=; Ncor= a 0 0 0 212.0 301.0 3.0 2.0 100.0 7.0 651.0 651.0 651.0 0.0 3.0 0.0 2.0 465.0 174.0 c 0 0 0 70.0 7.0 2.0 1.0 651.0 651.0 0.0 1.0 0.0 0.0 0.0 4.0 651.0 5.0 217.0 g 0 0 0 325.0 350.0 651.0 17.0 41.0 4.0 7.0 2.0 5.0 651.0 651.0 24.0 7.0 186.0 101.0 t 0 0 0 43.0 7.0 7.0 651.0 104.0 15.0 0.0 3.0 0.0 1.0 64.0 651.0 35.0 9.0 159.0

MA1537.1_shift3 (NR2F1(var.2))
; oligos_8nt_mkv6_m15 versus MA1537.1 (NR2F1(var.2)); m=4/8; ncol2=15; w=12; offset=-3; strand=D; shift=3; score=0.566168; ---rrGGTCAAAGGTCAm ; cor=; Ncor= a 0 0 0 12164.0 20462.0 317.0 468.0 8.0 10.0 33956.0 33956.0 33956.0 13.0 242.0 21.0 37.0 33956.0 9117.0 c 0 0 0 4591.0 436.0 122.0 42.0 465.0 33956.0 6.0 228.0 48.0 0.0 0.0 751.0 33956.0 279.0 9477.0 g 0 0 0 13408.0 13494.0 33956.0 33956.0 1340.0 641.0 606.0 3361.0 2542.0 33956.0 33956.0 1854.0 1543.0 6237.0 7332.0 t 0 0 0 3792.0 280.0 767.0 744.0 33956.0 2239.0 19.0 2711.0 41.0 59.0 494.0 33956.0 4148.0 720.0 8029.0

MA0677.1_shift3 (Nr2f6)
; oligos_8nt_mkv6_m15 versus MA0677.1 (Nr2f6); m=5/8; ncol2=14; w=11; offset=-3; strand=D; shift=3; score=0.525502; ---rrGGTCAAAGGTCA- ; cor=; Ncor= a 0 0 0 152.0 216.0 10.0 11.0 6.0 11.0 454.0 425.0 450.0 2.0 4.0 2.0 1.0 449.0 0 c 0 0 0 68.0 11.0 7.0 8.0 18.0 523.0 6.0 11.0 2.0 2.0 1.0 10.0 614.0 7.0 0 g 0 0 0 163.0 158.0 312.0 305.0 25.0 18.0 8.0 42.0 35.0 320.0 314.0 15.0 21.0 44.0 0 t 0 0 0 55.0 6.0 21.0 24.0 385.0 56.0 8.0 35.0 0.0 5.0 16.0 419.0 59.0 7.0 0

MA1536.1_shift10 (NR2C2(var.2))
; oligos_8nt_mkv6_m15 versus MA1536.1 (NR2C2(var.2)); m=6/8; ncol2=8; w=8; offset=4; strand=D; shift=10; score=0.49729; ----------rrGGTCRh ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6236.0 10232.0 0.0 0.0 0.0 0.0 18628.0 5065.0 c 0 0 0 0 0 0 0 0 0 0 3111.0 719.0 236.0 0.0 0.0 18628.0 0.0 4757.0 g 0 0 0 0 0 0 0 0 0 0 6420.0 8395.0 18628.0 18628.0 1588.0 1643.0 6639.0 3684.0 t 0 0 0 0 0 0 0 0 0 0 2861.0 0.0 1341.0 4790.0 18628.0 4406.0 0.0 5122.0

MA0017.2_shift8 (NR2F1)
; oligos_8nt_mkv6_m15 versus MA0017.2 (NR2F1); m=7/8; ncol2=13; w=10; offset=2; strand=D; shift=8; score=0.478153; --------carRGGTCAm ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4802.0 7266.0 6333.0 8496.0 0.0 0.0 0.0 0.0 12059.0 5116.0 c 0 0 0 0 0 0 0 0 11446.0 1692.0 387.0 0.0 30.0 0.0 0.0 12059.0 0.0 3055.0 g 0 0 0 0 0 0 0 0 3276.0 1153.0 4869.0 3791.0 12059.0 12059.0 0.0 0.0 91.0 1618.0 t 0 0 0 0 0 0 0 0 3980.0 1948.0 469.0 0.0 0.0 0.0 12059.0 0.0 0.0 2270.0

MA0730.1_shift0 (RARA(var.2))
; oligos_8nt_mkv6_m15 versus MA0730.1 (RARA(var.2)); m=8/8; ncol2=17; w=11; offset=-6; strand=D; shift=0; score=0.432115; AGGTCAysyaRAGGTCA- ; cor=; Ncor= a 1089.0 0.0 0.0 6.0 10.0 1391.0 301.0 213.0 147.0 972.0 1015.0 1126.0 2.0 1.0 8.0 4.0 1486.0 0 c 24.0 0.0 2.0 11.0 1980.0 16.0 397.0 432.0 677.0 118.0 17.0 16.0 0.0 7.0 11.0 1923.0 3.0 0 g 313.0 1488.0 1451.0 17.0 9.0 11.0 84.0 584.0 157.0 198.0 348.0 269.0 1455.0 1440.0 13.0 26.0 25.0 0 t 0.0 2.0 71.0 1143.0 21.0 2.0 581.0 223.0 502.0 228.0 7.0 1.0 4.0 35.0 1131.0 22.0 10.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m15_shift6 (oligos_8nt_mkv6_m15oligos_8nt_mkv6_m15)				; oligos_8nt_mkv6_m15 (oligos_8nt_mkv6_m15oligos_8nt_mkv6_m15); m=0 (reference); ncol1=12; shift=6; ncol=18; ------ssCACAGGTCss ; Alignment reference a 0 0 0 0 0 0 214 230 29 911 18 880 16 29 7 29 216 141 c 0 0 0 0 0 0 311 295 908 25 933 47 106 4 6 955 344 309 g 0 0 0 0 0 0 299 269 41 70 33 75 849 960 13 12 275 342 t 0 0 0 0 0 0 185 215 31 3 25 7 38 16 983 13 174 217
MA0745.2_rc_shift6 (SNAI2_rc)				; oligos_8nt_mkv6_m15 versus MA0745.2_rc (SNAI2_rc); m=1/8; ncol2=13; w=12; offset=0; strand=R; shift=6; score=0.649451; ------rykACAGGTGcr ; cor=; Ncor= a 0 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 c 0 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 g 0 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 t 0 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0
MA1620.1_rc_shift7 (Ptf1a(var.3)_rc)				; oligos_8nt_mkv6_m15 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=2/8; ncol2=12; w=11; offset=1; strand=R; shift=7; score=0.594099; -------rmaCAGGTGtk ; cor=; Ncor= a 0 0 0 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 c 0 0 0 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 g 0 0 0 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 t 0 0 0 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0
MA1494.1_shift3 (HNF4A(var.2))				; oligos_8nt_mkv6_m15 versus MA1494.1 (HNF4A(var.2)); m=3/8; ncol2=15; w=12; offset=-3; strand=D; shift=3; score=0.574785; ---rrGTCCAAAGGTCRm ; cor=; Ncor= a 0 0 0 212.0 301.0 3.0 2.0 100.0 7.0 651.0 651.0 651.0 0.0 3.0 0.0 2.0 465.0 174.0 c 0 0 0 70.0 7.0 2.0 1.0 651.0 651.0 0.0 1.0 0.0 0.0 0.0 4.0 651.0 5.0 217.0 g 0 0 0 325.0 350.0 651.0 17.0 41.0 4.0 7.0 2.0 5.0 651.0 651.0 24.0 7.0 186.0 101.0 t 0 0 0 43.0 7.0 7.0 651.0 104.0 15.0 0.0 3.0 0.0 1.0 64.0 651.0 35.0 9.0 159.0
MA1537.1_shift3 (NR2F1(var.2))				; oligos_8nt_mkv6_m15 versus MA1537.1 (NR2F1(var.2)); m=4/8; ncol2=15; w=12; offset=-3; strand=D; shift=3; score=0.566168; ---rrGGTCAAAGGTCAm ; cor=; Ncor= a 0 0 0 12164.0 20462.0 317.0 468.0 8.0 10.0 33956.0 33956.0 33956.0 13.0 242.0 21.0 37.0 33956.0 9117.0 c 0 0 0 4591.0 436.0 122.0 42.0 465.0 33956.0 6.0 228.0 48.0 0.0 0.0 751.0 33956.0 279.0 9477.0 g 0 0 0 13408.0 13494.0 33956.0 33956.0 1340.0 641.0 606.0 3361.0 2542.0 33956.0 33956.0 1854.0 1543.0 6237.0 7332.0 t 0 0 0 3792.0 280.0 767.0 744.0 33956.0 2239.0 19.0 2711.0 41.0 59.0 494.0 33956.0 4148.0 720.0 8029.0
MA0677.1_shift3 (Nr2f6)				; oligos_8nt_mkv6_m15 versus MA0677.1 (Nr2f6); m=5/8; ncol2=14; w=11; offset=-3; strand=D; shift=3; score=0.525502; ---rrGGTCAAAGGTCA- ; cor=; Ncor= a 0 0 0 152.0 216.0 10.0 11.0 6.0 11.0 454.0 425.0 450.0 2.0 4.0 2.0 1.0 449.0 0 c 0 0 0 68.0 11.0 7.0 8.0 18.0 523.0 6.0 11.0 2.0 2.0 1.0 10.0 614.0 7.0 0 g 0 0 0 163.0 158.0 312.0 305.0 25.0 18.0 8.0 42.0 35.0 320.0 314.0 15.0 21.0 44.0 0 t 0 0 0 55.0 6.0 21.0 24.0 385.0 56.0 8.0 35.0 0.0 5.0 16.0 419.0 59.0 7.0 0
MA1536.1_shift10 (NR2C2(var.2))				; oligos_8nt_mkv6_m15 versus MA1536.1 (NR2C2(var.2)); m=6/8; ncol2=8; w=8; offset=4; strand=D; shift=10; score=0.49729; ----------rrGGTCRh ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6236.0 10232.0 0.0 0.0 0.0 0.0 18628.0 5065.0 c 0 0 0 0 0 0 0 0 0 0 3111.0 719.0 236.0 0.0 0.0 18628.0 0.0 4757.0 g 0 0 0 0 0 0 0 0 0 0 6420.0 8395.0 18628.0 18628.0 1588.0 1643.0 6639.0 3684.0 t 0 0 0 0 0 0 0 0 0 0 2861.0 0.0 1341.0 4790.0 18628.0 4406.0 0.0 5122.0
MA0017.2_shift8 (NR2F1)				; oligos_8nt_mkv6_m15 versus MA0017.2 (NR2F1); m=7/8; ncol2=13; w=10; offset=2; strand=D; shift=8; score=0.478153; --------carRGGTCAm ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4802.0 7266.0 6333.0 8496.0 0.0 0.0 0.0 0.0 12059.0 5116.0 c 0 0 0 0 0 0 0 0 11446.0 1692.0 387.0 0.0 30.0 0.0 0.0 12059.0 0.0 3055.0 g 0 0 0 0 0 0 0 0 3276.0 1153.0 4869.0 3791.0 12059.0 12059.0 0.0 0.0 91.0 1618.0 t 0 0 0 0 0 0 0 0 3980.0 1948.0 469.0 0.0 0.0 0.0 12059.0 0.0 0.0 2270.0
MA0730.1_shift0 (RARA(var.2))				; oligos_8nt_mkv6_m15 versus MA0730.1 (RARA(var.2)); m=8/8; ncol2=17; w=11; offset=-6; strand=D; shift=0; score=0.432115; AGGTCAysyaRAGGTCA- ; cor=; Ncor= a 1089.0 0.0 0.0 6.0 10.0 1391.0 301.0 213.0 147.0 972.0 1015.0 1126.0 2.0 1.0 8.0 4.0 1486.0 0 c 24.0 0.0 2.0 11.0 1980.0 16.0 397.0 432.0 677.0 118.0 17.0 16.0 0.0 7.0 11.0 1923.0 3.0 0 g 313.0 1488.0 1451.0 17.0 9.0 11.0 84.0 584.0 157.0 198.0 348.0 269.0 1455.0 1440.0 13.0 26.0 25.0 0 t 0.0 2.0 71.0 1143.0 21.0 2.0 581.0 223.0 502.0 228.0 7.0 1.0 4.0 35.0 1131.0 22.0 10.0 0