One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m20/peak-motifs_oligos_8nt_mkv6_m20.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m20/peak-motifs_oligos_8nt_mkv6_m20_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m20_shift2 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_8nt_mkv6_m20_shift2 (oligos_8nt_mkv6_m20oligos_8nt_mkv6_m20) |
 |
|
|
; oligos_8nt_mkv6_m20 (oligos_8nt_mkv6_m20oligos_8nt_mkv6_m20); m=0 (reference); ncol1=12; shift=2; ncol=14; --ssCGCTCCCGss
; Alignment reference
a 0 0 447 418 22 23 75 78 97 69 6 28 441 548
c 0 0 1834 1602 3791 132 3593 377 3522 3628 3731 144 1710 1551
g 0 0 1142 1535 234 3890 283 657 145 299 332 3867 1468 1380
t 0 0 648 516 24 26 120 2959 307 75 2 32 452 592
|
| MA1513.1_shift0 (KLF15) |
 |
|
|
; oligos_8nt_mkv6_m20 versus MA1513.1 (KLF15); m=1/1; ncol2=11; w=9; offset=-2; strand=D; shift=0; score=0.459211; scCCCGCCCcs---
; cor=; Ncor=
a 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 0
c 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 0
g 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 0
t 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0 0
|