Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m23/peak-motifs_oligos_8nt_mkv6_m23.tf
		file1	1	13	1837
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv6_m23 MA0093.3 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 USF1 0.864 0.802 13 14 13 14 0.9286 1.0000 0.9286 R -1
oligos_8nt_mkv6_m23 MA0526.3 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 USF2 0.858 0.797 13 14 13 14 0.9286 1.0000 0.9286 R -1
oligos_8nt_mkv6_m23 MA0829.2 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 SREBF1(var.2) 0.838 0.778 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_8nt_mkv6_m23 MA0830.2 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TCF4 0.751 0.751 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv6_m23 MA1631.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 ASCL1(var.2) 0.746 0.746 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv6_m23 MA0499.2 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 MYOD1 0.734 0.734 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv6_m23 MA0745.2 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 SNAI2 0.728 0.728 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv6_m23 MA1621.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 Rbpjl 0.746 0.693 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_8nt_mkv6_m23 MA0103.3 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 ZEB1 0.797 0.675 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_8nt_mkv6_m23 MA1620.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 Ptf1a(var.3) 0.722 0.667 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_8nt_mkv6_m23 MA0871.2 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TFEC 0.776 0.657 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_8nt_mkv6_m23 MA0636.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 BHLHE41 0.828 0.637 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv6_m23 MA0692.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TFEB 0.823 0.633 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv6_m23 MA0828.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 SREBF2(var.2) 0.817 0.629 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv6_m23 MA1648.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TCF12(var.2) 0.716 0.606 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_8nt_mkv6_m23 MA0620.3 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 MITF 0.835 0.603 13 18 13 18 0.7222 1.0000 0.7222 D -3
oligos_8nt_mkv6_m23 MA1464.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 ARNT2 0.782 0.602 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_8nt_mkv6_m23 MA0522.3 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TCF3 0.709 0.600 13 11 11 13 0.8462 0.8462 1.0000 D 1
oligos_8nt_mkv6_m23 MA0603.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 Arntl 0.777 0.598 13 10 10 13 0.7692 0.7692 1.0000 D 0
oligos_8nt_mkv6_m23 MA0464.2 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 BHLHE40 0.764 0.587 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv6_m23 MA1558.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 SNAI1 0.762 0.586 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_8nt_mkv6_m23 MA0663.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 MLX 0.760 0.585 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_8nt_mkv6_m23 MA0664.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 MLXIPL 0.749 0.576 13 10 10 13 0.7692 0.7692 1.0000 R 1
oligos_8nt_mkv6_m23 MA0595.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 SREBF1 0.714 0.549 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv6_m23 MA0820.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 FIGLA 0.712 0.548 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_8nt_mkv6_m23 MA0831.2 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TFE3 0.813 0.501 13 8 8 13 0.6154 0.6154 1.0000 R 1
oligos_8nt_mkv6_m23 MA0807.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TBX5 0.755 0.464 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_8nt_mkv6_m23 MA0806.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TBX4 0.745 0.458 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_8nt_mkv6_m23 MA0498.2 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 MEIS1 0.819 0.441 13 7 7 13 0.5385 0.5385 1.0000 D 6
oligos_8nt_mkv6_m23 MA0067.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 Pax2 0.713 0.439 13 8 8 13 0.6154 0.6154 1.0000 R 4
oligos_8nt_mkv6_m23 MA0803.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 TBX15 0.707 0.435 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_8nt_mkv6_m23 MA0622.1 oligos_8nt_mkv6_m23oligos_8nt_mkv6_m23 Mlxip 0.703 0.433 13 8 8 13 0.6154 0.6154 1.0000 D 2 
 Host name	pedagogix
 Job started	2020-04-14.163403
 Job done	2020-04-14.163451
 Seconds	7.97
	user	7.97
	system	0.8
	cuser	37.95
;	csystem	1.68