One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m25/peak-motifs_oligos_8nt_mkv6_m25.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m25/peak-motifs_oligos_8nt_mkv6_m25_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m25_shift2 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m25_shift2 (oligos_8nt_mkv6_m25oligos_8nt_mkv6_m25)
; oligos_8nt_mkv6_m25 (oligos_8nt_mkv6_m25oligos_8nt_mkv6_m25); m=0 (reference); ncol1=12; shift=2; ncol=15; --gvTGATGCAAys- ; Alignment reference a 0 0 277 401 29 47 1345 13 46 146 1281 1338 286 325 0 c 0 0 325 455 27 42 9 81 56 1000 41 25 378 441 0 g 0 0 508 373 24 1256 22 15 1241 153 25 10 331 352 0 t 0 0 294 175 1324 59 28 1295 61 105 57 31 409 286 0

MA0833.2_shift1 (ATF4)
; oligos_8nt_mkv6_m25 versus MA0833.2 (ATF4); m=1/7; ncol2=14; w=12; offset=-1; strand=D; shift=1; score=0.81872; -rraTGATGCAATmw ; cor=; Ncor= a 0 12094.0 11782.0 20881.0 498.0 228.0 32087.0 243.0 156.0 4906.0 32904.0 32963.0 803.0 12607.0 11049.0 c 0 5054.0 4365.0 5781.0 386.0 198.0 217.0 1626.0 51.0 23000.0 169.0 70.0 6134.0 9846.0 6064.0 g 0 9022.0 10152.0 5970.0 297.0 32315.0 543.0 328.0 32958.0 105.0 74.0 112.0 2808.0 4718.0 5731.0 t 0 7106.0 6977.0 644.0 32095.0 535.0 429.0 31079.0 111.0 5265.0 129.0 131.0 23531.0 6105.0 10432.0

MA0025.2_shift2 (NFIL3)
; oligos_8nt_mkv6_m25 versus MA0025.2 (NFIL3); m=2/7; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.744923; --wrTTATGyAAtaw ; cor=; Ncor= a 0 0 6368.0 9041.0 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 21911.0 2193.0 7671.0 6692.0 c 0 0 3904.0 3896.0 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 251.0 4959.0 5630.0 4929.0 g 0 0 5615.0 7261.0 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 360.0 2701.0 4152.0 4482.0 t 0 0 7109.0 2798.0 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0 474.0 13143.0 5543.0 6893.0

MA1636.1_shift1 (CEBPG(var.2))
; oligos_8nt_mkv6_m25 versus MA1636.1 (CEBPG(var.2)); m=3/7; ncol2=15; w=12; offset=-1; strand=D; shift=1; score=0.742815; -adATGATGCAATmw ; cor=; Ncor= a 0 12055.0 11639.0 25956.0 318.0 659.0 31891.0 2082.0 522.0 4374.0 36286.0 36428.0 1081.0 12949.0 12999.0 c 0 7638.0 4688.0 3080.0 249.0 351.0 481.0 2719.0 215.0 28897.0 582.0 191.0 4761.0 15060.0 7052.0 g 0 8655.0 10136.0 7547.0 306.0 29947.0 2565.0 1101.0 36189.0 309.0 129.0 304.0 2291.0 4027.0 5334.0 t 0 8968.0 10853.0 733.0 36443.0 6359.0 2379.0 31414.0 390.0 3736.0 319.0 393.0 29183.0 5280.0 11931.0

MA0043.3_shift1 (HLF)
; oligos_8nt_mkv6_m25 versus MA0043.3 (HLF); m=4/7; ncol2=14; w=12; offset=-1; strand=D; shift=1; score=0.69376; -wdrTTATGYAAymw ; cor=; Ncor= a 0 6810.0 6191.0 8789.0 295.0 162.0 22746.0 197.0 2418.0 369.0 24156.0 24055.0 1399.0 8897.0 6902.0 c 0 5063.0 4009.0 4432.0 242.0 96.0 125.0 1548.0 112.0 17203.0 122.0 67.0 13237.0 6412.0 5267.0 g 0 5626.0 6297.0 9793.0 148.0 895.0 1344.0 253.0 21705.0 199.0 48.0 189.0 3300.0 3218.0 5523.0 t 0 6925.0 7927.0 1410.0 23739.0 23271.0 209.0 22426.0 189.0 6653.0 98.0 113.0 6488.0 5897.0 6732.0

MA0488.1_shift0 (JUN)
; oligos_8nt_mkv6_m25 versus MA0488.1 (JUN); m=5/7; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.595188; awrATGAtGTmAT-- ; cor=; Ncor= a 8141.0 7116.0 6496.0 16526.0 0.0 0.0 20967.0 0.0 0.0 938.0 6904.0 20968.0 203.0 0 0 c 2792.0 2938.0 1903.0 729.0 0.0 0.0 0.0 3438.0 608.0 3531.0 14064.0 0.0 3704.0 0 0 g 4894.0 4985.0 9682.0 3713.0 0.0 20849.0 0.0 4512.0 20360.0 0.0 0.0 0.0 1016.0 0 0 t 5141.0 5929.0 2887.0 0.0 20968.0 119.0 1.0 13018.0 0.0 16499.0 0.0 0.0 16045.0 0 0

MA1115.1_shift4 (POU5F1)
; oligos_8nt_mkv6_m25 versus MA1115.1 (POU5F1); m=6/7; ncol2=11; w=10; offset=2; strand=D; shift=4; score=0.580303; ----wwATGCAAAtd ; cor=; Ncor= a 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 c 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 g 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 t 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0

MA0019.1_shift4 (Ddit3::Cebpa)
; oligos_8nt_mkv6_m25 versus MA0019.1 (Ddit3::Cebpa); m=7/7; ncol2=12; w=10; offset=2; strand=D; shift=4; score=0.533568; ----rrrTGCAATmc ; cor=; Ncor= a 0 0 0 0 14.0 11.0 18.0 0.0 0.0 4.0 38.0 36.0 0.0 14.0 4.0 c 0 0 0 0 7.0 7.0 3.0 1.0 0.0 33.0 1.0 2.0 6.0 17.0 23.0 g 0 0 0 0 12.0 14.0 15.0 0.0 38.0 0.0 0.0 1.0 0.0 5.0 9.0 t 0 0 0 0 6.0 7.0 3.0 38.0 1.0 2.0 0.0 0.0 33.0 3.0 3.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m25_shift2 (oligos_8nt_mkv6_m25oligos_8nt_mkv6_m25)				; oligos_8nt_mkv6_m25 (oligos_8nt_mkv6_m25oligos_8nt_mkv6_m25); m=0 (reference); ncol1=12; shift=2; ncol=15; --gvTGATGCAAys- ; Alignment reference a 0 0 277 401 29 47 1345 13 46 146 1281 1338 286 325 0 c 0 0 325 455 27 42 9 81 56 1000 41 25 378 441 0 g 0 0 508 373 24 1256 22 15 1241 153 25 10 331 352 0 t 0 0 294 175 1324 59 28 1295 61 105 57 31 409 286 0
MA0833.2_shift1 (ATF4)				; oligos_8nt_mkv6_m25 versus MA0833.2 (ATF4); m=1/7; ncol2=14; w=12; offset=-1; strand=D; shift=1; score=0.81872; -rraTGATGCAATmw ; cor=; Ncor= a 0 12094.0 11782.0 20881.0 498.0 228.0 32087.0 243.0 156.0 4906.0 32904.0 32963.0 803.0 12607.0 11049.0 c 0 5054.0 4365.0 5781.0 386.0 198.0 217.0 1626.0 51.0 23000.0 169.0 70.0 6134.0 9846.0 6064.0 g 0 9022.0 10152.0 5970.0 297.0 32315.0 543.0 328.0 32958.0 105.0 74.0 112.0 2808.0 4718.0 5731.0 t 0 7106.0 6977.0 644.0 32095.0 535.0 429.0 31079.0 111.0 5265.0 129.0 131.0 23531.0 6105.0 10432.0
MA0025.2_shift2 (NFIL3)				; oligos_8nt_mkv6_m25 versus MA0025.2 (NFIL3); m=2/7; ncol2=13; w=12; offset=0; strand=D; shift=2; score=0.744923; --wrTTATGyAAtaw ; cor=; Ncor= a 0 0 6368.0 9041.0 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 21911.0 2193.0 7671.0 6692.0 c 0 0 3904.0 3896.0 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 251.0 4959.0 5630.0 4929.0 g 0 0 5615.0 7261.0 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 360.0 2701.0 4152.0 4482.0 t 0 0 7109.0 2798.0 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0 474.0 13143.0 5543.0 6893.0
MA1636.1_shift1 (CEBPG(var.2))				; oligos_8nt_mkv6_m25 versus MA1636.1 (CEBPG(var.2)); m=3/7; ncol2=15; w=12; offset=-1; strand=D; shift=1; score=0.742815; -adATGATGCAATmw ; cor=; Ncor= a 0 12055.0 11639.0 25956.0 318.0 659.0 31891.0 2082.0 522.0 4374.0 36286.0 36428.0 1081.0 12949.0 12999.0 c 0 7638.0 4688.0 3080.0 249.0 351.0 481.0 2719.0 215.0 28897.0 582.0 191.0 4761.0 15060.0 7052.0 g 0 8655.0 10136.0 7547.0 306.0 29947.0 2565.0 1101.0 36189.0 309.0 129.0 304.0 2291.0 4027.0 5334.0 t 0 8968.0 10853.0 733.0 36443.0 6359.0 2379.0 31414.0 390.0 3736.0 319.0 393.0 29183.0 5280.0 11931.0
MA0043.3_shift1 (HLF)				; oligos_8nt_mkv6_m25 versus MA0043.3 (HLF); m=4/7; ncol2=14; w=12; offset=-1; strand=D; shift=1; score=0.69376; -wdrTTATGYAAymw ; cor=; Ncor= a 0 6810.0 6191.0 8789.0 295.0 162.0 22746.0 197.0 2418.0 369.0 24156.0 24055.0 1399.0 8897.0 6902.0 c 0 5063.0 4009.0 4432.0 242.0 96.0 125.0 1548.0 112.0 17203.0 122.0 67.0 13237.0 6412.0 5267.0 g 0 5626.0 6297.0 9793.0 148.0 895.0 1344.0 253.0 21705.0 199.0 48.0 189.0 3300.0 3218.0 5523.0 t 0 6925.0 7927.0 1410.0 23739.0 23271.0 209.0 22426.0 189.0 6653.0 98.0 113.0 6488.0 5897.0 6732.0
MA0488.1_shift0 (JUN)				; oligos_8nt_mkv6_m25 versus MA0488.1 (JUN); m=5/7; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=0.595188; awrATGAtGTmAT-- ; cor=; Ncor= a 8141.0 7116.0 6496.0 16526.0 0.0 0.0 20967.0 0.0 0.0 938.0 6904.0 20968.0 203.0 0 0 c 2792.0 2938.0 1903.0 729.0 0.0 0.0 0.0 3438.0 608.0 3531.0 14064.0 0.0 3704.0 0 0 g 4894.0 4985.0 9682.0 3713.0 0.0 20849.0 0.0 4512.0 20360.0 0.0 0.0 0.0 1016.0 0 0 t 5141.0 5929.0 2887.0 0.0 20968.0 119.0 1.0 13018.0 0.0 16499.0 0.0 0.0 16045.0 0 0
MA1115.1_shift4 (POU5F1)				; oligos_8nt_mkv6_m25 versus MA1115.1 (POU5F1); m=6/7; ncol2=11; w=10; offset=2; strand=D; shift=4; score=0.580303; ----wwATGCAAAtd ; cor=; Ncor= a 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 c 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 g 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 t 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0
MA0019.1_shift4 (Ddit3::Cebpa)				; oligos_8nt_mkv6_m25 versus MA0019.1 (Ddit3::Cebpa); m=7/7; ncol2=12; w=10; offset=2; strand=D; shift=4; score=0.533568; ----rrrTGCAATmc ; cor=; Ncor= a 0 0 0 0 14.0 11.0 18.0 0.0 0.0 4.0 38.0 36.0 0.0 14.0 4.0 c 0 0 0 0 7.0 7.0 3.0 1.0 0.0 33.0 1.0 2.0 6.0 17.0 23.0 g 0 0 0 0 12.0 14.0 15.0 0.0 38.0 0.0 0.0 1.0 0.0 5.0 9.0 t 0 0 0 0 6.0 7.0 3.0 38.0 1.0 2.0 0.0 0.0 33.0 3.0 3.0