Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m26/peak-motifs_oligos_8nt_mkv6_m26.tf
		file1	1	12	3445
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv6_m26 MA1648.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TCF12(var.2) 0.934 0.856 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv6_m26 MA0522.3 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TCF3 0.929 0.851 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv6_m26 MA1631.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 ASCL1(var.2) 0.912 0.842 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv6_m26 MA0830.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TCF4 0.892 0.824 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv6_m26 MA0103.3 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 ZEB1 0.882 0.809 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv6_m26 MA1558.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 SNAI1 0.905 0.754 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv6_m26 MA1559.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 SNAI3 0.875 0.729 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv6_m26 MA0745.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 SNAI2 0.785 0.725 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv6_m26 MA0820.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 FIGLA 0.837 0.698 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m26 MA0499.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 MYOD1 0.753 0.695 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv6_m26 MA1621.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 Rbpjl 0.809 0.694 12 14 12 14 0.8571 1.0000 0.8571 R 0
oligos_8nt_mkv6_m26 MA1620.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 Ptf1a(var.3) 0.805 0.681 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv6_m26 MA0059.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 MAX::MYC 0.718 0.658 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_8nt_mkv6_m26 MA1100.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 ASCL1 0.783 0.653 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv6_m26 MA0816.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 Ascl2 0.774 0.645 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m26 MA1628.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 Zic1::Zic2 0.820 0.630 12 11 10 13 0.7692 0.8333 0.9091 D -1
oligos_8nt_mkv6_m26 MA0048.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 NHLH1 0.749 0.624 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m26 MA0147.3 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 MYC 0.725 0.613 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv6_m26 MA0500.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 MYOG 0.724 0.612 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv6_m26 MA0058.3 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 MAX 0.724 0.603 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m26 MA1472.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 BHLHA15(var.2) 0.721 0.600 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv6_m26 MA0825.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 MNT 0.719 0.599 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m26 MA1585.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 ZKSCAN1 0.710 0.592 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_8nt_mkv6_m26 MA1560.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 SOHLH2 0.708 0.590 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m26 MA1629.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 Zic2 0.803 0.589 12 14 11 15 0.7333 0.9167 0.7857 D -3
oligos_8nt_mkv6_m26 MA0626.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 Npas2 0.705 0.587 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv6_m26 MA0744.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 SCRT2 0.770 0.577 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_8nt_mkv6_m26 MA0743.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 SCRT1 0.765 0.574 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_8nt_mkv6_m26 MA0521.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 Tcf12 0.742 0.571 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_8nt_mkv6_m26 MA0622.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 Mlxip 0.751 0.501 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_8nt_mkv6_m26 MA0807.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX5 0.908 0.489 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv6_m26 MA0806.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX4 0.906 0.488 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv6_m26 MA0803.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX15 0.870 0.469 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv6_m26 MA0831.2 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TFE3 0.701 0.467 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv6_m26 MA0805.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX1 0.857 0.462 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv6_m26 MA0801.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 MGA 0.849 0.457 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv6_m26 MA1565.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX18 0.750 0.450 12 12 9 15 0.6000 0.7500 0.7500 D 3
oligos_8nt_mkv6_m26 MA1567.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX6 0.787 0.450 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv6_m26 MA1566.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX3 0.751 0.429 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv6_m26 MA0690.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX21 0.731 0.417 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv6_m26 MA0688.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBX2 0.776 0.414 12 11 8 15 0.5333 0.6667 0.7273 D 4
oligos_8nt_mkv6_m26 MA0802.1 oligos_8nt_mkv6_m26oligos_8nt_mkv6_m26 TBR1 0.877 0.409 12 10 7 15 0.4667 0.5833 0.7000 D 5 
 Host name	pedagogix
 Job started	2020-04-14.163505
 Job done	2020-04-14.163602
 Seconds	7.73
	user	7.73
	system	1.01
	cuser	45.08
;	csystem	2.87