Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m31/peak-motifs_oligos_8nt_mkv6_m31.tf
		file1	1	12	1790
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv6_m31 MA0131.2 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 HINFP 0.769 0.651 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv6_m31 MA0117.2 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 Mafb 0.735 0.525 12 12 10 14 0.7143 0.8333 0.8333 D -2
oligos_8nt_mkv6_m31 MA0604.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 Atf1 0.781 0.521 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_8nt_mkv6_m31 MA0842.2 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 NRL 0.756 0.504 12 13 10 15 0.6667 0.8333 0.7692 D -3
oligos_8nt_mkv6_m31 MA1127.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 FOSB::JUN 0.739 0.475 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv6_m31 MA1131.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 FOSL2::JUN(var.2) 0.708 0.455 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv6_m31 MA1475.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 CREB3L4(var.2) 0.757 0.454 12 12 9 15 0.6000 0.7500 0.7500 R 3
oligos_8nt_mkv6_m31 MA1140.2 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 JUNB(var.2) 0.727 0.436 12 12 9 15 0.6000 0.7500 0.7500 R 3
oligos_8nt_mkv6_m31 MA0656.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 JDP2(var.2) 0.713 0.428 12 12 9 15 0.6000 0.7500 0.7500 R 3
oligos_8nt_mkv6_m31 MA1143.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 FOSL1::JUND(var.2) 0.745 0.426 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv6_m31 MA1474.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 CREB3L4 0.708 0.425 12 12 9 15 0.6000 0.7500 0.7500 R 3
oligos_8nt_mkv6_m31 MA0844.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 XBP1 0.786 0.416 12 14 9 17 0.5294 0.7500 0.6429 R 3
oligos_8nt_mkv6_m31 MA1136.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 FOSB::JUNB(var.2) 0.718 0.410 12 10 8 14 0.5714 0.6667 0.8000 R 4
oligos_8nt_mkv6_m31 MA1129.1 oligos_8nt_mkv6_m31oligos_8nt_mkv6_m31 FOSL1::JUN(var.2) 0.712 0.407 12 10 8 14 0.5714 0.6667 0.8000 R 4 
 Host name	pedagogix
 Job started	2020-04-14.163622
 Job done	2020-04-14.163632
 Seconds	1.66
	user	1.66
	system	0.22
	cuser	7.26
;	csystem	0.61