Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m32/peak-motifs_oligos_8nt_mkv6_m32.tf
		file1	1	12	3674
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv6_m32 MA0472.2 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 EGR2 0.743 0.681 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_8nt_mkv6_m32 MA0162.4 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 EGR1 0.762 0.653 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_8nt_mkv6_m32 MA0732.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 EGR3 0.716 0.573 12 15 12 15 0.8000 1.0000 0.8000 D -1
oligos_8nt_mkv6_m32 MA0733.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 EGR4 0.706 0.530 12 16 12 16 0.7500 1.0000 0.7500 D -1
oligos_8nt_mkv6_m32 MA1516.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 KLF3 0.799 0.514 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv6_m32 MA0608.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 Creb3l2 0.791 0.486 12 9 8 13 0.6154 0.6667 0.8889 D 4
oligos_8nt_mkv6_m32 MA1099.2 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 HES1 0.792 0.452 12 10 8 14 0.5714 0.6667 0.8000 R 4
oligos_8nt_mkv6_m32 MA1517.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 KLF6 0.703 0.452 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv6_m32 MA0746.2 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 SP3 0.782 0.440 12 13 9 16 0.5625 0.7500 0.6923 D 3
oligos_8nt_mkv6_m32 MA0006.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 Ahr::Arnt 0.877 0.438 12 6 6 12 0.5000 0.5000 1.0000 R 6
oligos_8nt_mkv6_m32 MA1474.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 CREB3L4 0.731 0.438 12 12 9 15 0.6000 0.7500 0.7500 D 3
oligos_8nt_mkv6_m32 MA0104.4 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 MYCN 0.715 0.429 12 12 9 15 0.6000 0.7500 0.7500 D 3
oligos_8nt_mkv6_m32 MA0147.3 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 MYC 0.703 0.422 12 12 9 15 0.6000 0.7500 0.7500 D 3
oligos_8nt_mkv6_m32 MA1512.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 KLF11 0.780 0.416 12 11 8 15 0.5333 0.6667 0.7273 D 4
oligos_8nt_mkv6_m32 MA0742.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 Klf12 0.830 0.415 12 15 9 18 0.5000 0.7500 0.6000 D 3
oligos_8nt_mkv6_m32 MA0259.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 ARNT::HIF1A 0.771 0.415 12 8 7 13 0.5385 0.5833 0.8750 R 5
oligos_8nt_mkv6_m32 MA0740.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 KLF14 0.781 0.414 12 14 9 17 0.5294 0.7500 0.6429 D 3
oligos_8nt_mkv6_m32 MA0649.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 HEY2 0.720 0.412 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv6_m32 MA0741.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 KLF16 0.766 0.408 12 11 8 15 0.5333 0.6667 0.7273 D 4
oligos_8nt_mkv6_m32 MA0616.2 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 HES2 0.707 0.404 12 10 8 14 0.5714 0.6667 0.8000 R 4
oligos_8nt_mkv6_m32 MA0823.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 HEY1 0.704 0.402 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv6_m32 MA0004.1 oligos_8nt_mkv6_m32oligos_8nt_mkv6_m32 Arnt 0.802 0.401 12 6 6 12 0.5000 0.5000 1.0000 R 6 
 Host name	pedagogix
 Job started	2020-04-14.163632
 Job done	2020-04-14.163655
 Seconds	2.76
	user	2.76
	system	0.44
	cuser	17.47
;	csystem	1.39