One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m35/peak-motifs_oligos_8nt_mkv6_m35.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m35/peak-motifs_oligos_8nt_mkv6_m35_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m35_shift3 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m35_shift3 (oligos_8nt_mkv6_m35oligos_8nt_mkv6_m35)
; oligos_8nt_mkv6_m35 (oligos_8nt_mkv6_m35oligos_8nt_mkv6_m35); m=0 (reference); ncol1=12; shift=3; ncol=17; ---cgCCCTGCCCss-- ; Alignment reference a 0 0 0 481 367 12 0 7 0 56 6 0 0 489 322 0 0 c 0 0 0 1007 562 2758 2732 2681 353 38 2773 2705 2769 867 857 0 0 g 0 0 0 676 1270 4 52 96 179 2669 0 79 15 794 1138 0 0 t 0 0 0 620 585 10 0 0 2252 21 5 0 0 634 467 0 0

MA1513.1_shift4 (KLF15)
; oligos_8nt_mkv6_m35 versus MA1513.1 (KLF15); m=1/12; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.767667; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv6_m35 versus MA0039.4 (KLF4); m=2/12; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.718293; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1515.1_shift3 (KLF2)
; oligos_8nt_mkv6_m35 versus MA1515.1 (KLF2); m=3/12; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.656089; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv6_m35 versus MA0599.1 (KLF5); m=4/12; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.649832; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0746.2_shift3 (SP3)
; oligos_8nt_mkv6_m35 versus MA0746.2 (SP3); m=5/12; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.649618; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0

MA1653.1_shift2 (ZNF148)
; oligos_8nt_mkv6_m35 versus MA1653.1 (ZNF148); m=6/12; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.607379; --ysCCCCTCCCcc--- ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0

MA0079.4_shift1 (SP1)
; oligos_8nt_mkv6_m35 versus MA0079.4 (SP1); m=7/12; ncol2=15; w=12; offset=-2; strand=D; shift=1; score=0.560211; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0

MA0597.1_shift7 (THAP1)
; oligos_8nt_mkv6_m35 versus MA0597.1 (THAP1); m=8/12; ncol2=9; w=8; offset=4; strand=D; shift=7; score= 0.5542; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0

MA0516.2_shift0 (SP2)
; oligos_8nt_mkv6_m35 versus MA0516.2 (SP2); m=9/12; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.520777; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0685.1_shift1 (SP4)
; oligos_8nt_mkv6_m35 versus MA0685.1 (SP4); m=10/12; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.495813; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0

MA0738.1_shift7 (HIC2)
; oligos_8nt_mkv6_m35 versus MA0738.1 (HIC2); m=11/12; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.480024; -------rTGCCMrsy- ; cor=; Ncor= a 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 c 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 g 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 t 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0

MA1102.2_rc_shift0 (CTCFL_rc)
; oligos_8nt_mkv6_m35 versus MA1102.2_rc (CTCFL_rc); m=12/12; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.425755; scGCCCCCTGsy----- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m35_shift3 (oligos_8nt_mkv6_m35oligos_8nt_mkv6_m35)				; oligos_8nt_mkv6_m35 (oligos_8nt_mkv6_m35oligos_8nt_mkv6_m35); m=0 (reference); ncol1=12; shift=3; ncol=17; ---cgCCCTGCCCss-- ; Alignment reference a 0 0 0 481 367 12 0 7 0 56 6 0 0 489 322 0 0 c 0 0 0 1007 562 2758 2732 2681 353 38 2773 2705 2769 867 857 0 0 g 0 0 0 676 1270 4 52 96 179 2669 0 79 15 794 1138 0 0 t 0 0 0 620 585 10 0 0 2252 21 5 0 0 634 467 0 0
MA1513.1_shift4 (KLF15)				; oligos_8nt_mkv6_m35 versus MA1513.1 (KLF15); m=1/12; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.767667; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0
MA0039.4_shift3 (KLF4)				; oligos_8nt_mkv6_m35 versus MA0039.4 (KLF4); m=2/12; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.718293; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0
MA1515.1_shift3 (KLF2)				; oligos_8nt_mkv6_m35 versus MA1515.1 (KLF2); m=3/12; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.656089; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0
MA0599.1_shift4 (KLF5)				; oligos_8nt_mkv6_m35 versus MA0599.1 (KLF5); m=4/12; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.649832; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA0746.2_shift3 (SP3)				; oligos_8nt_mkv6_m35 versus MA0746.2 (SP3); m=5/12; ncol2=13; w=12; offset=0; strand=D; shift=3; score=0.649618; ---srCCACGCCCmCy- ; cor=; Ncor= a 0 0 0 1267.0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 1516.0 0 c 0 0 0 1884.0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 2608.0 0 g 0 0 0 1895.0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 524.0 0 t 0 0 0 1545.0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 1943.0 0
MA1653.1_shift2 (ZNF148)				; oligos_8nt_mkv6_m35 versus MA1653.1 (ZNF148); m=6/12; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.607379; --ysCCCCTCCCcc--- ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 0 0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 0 0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 0 0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0 0 0
MA0079.4_shift1 (SP1)				; oligos_8nt_mkv6_m35 versus MA0079.4 (SP1); m=7/12; ncol2=15; w=12; offset=-2; strand=D; shift=1; score=0.560211; -ywrRCCACGCCCmCh- ; cor=; Ncor= a 0 7866.0 28233.0 28895.0 14584.0 962.0 55.0 42154.0 0.0 959.0 0.0 8.0 0.0 24666.0 1195.0 12598.0 0 c 0 13273.0 1872.0 1530.0 0.0 48854.0 49649.0 12672.0 49660.0 0.0 49666.0 49662.0 48772.0 24196.0 37612.0 15606.0 0 g 0 9691.0 999.0 19477.0 37543.0 82.0 0.0 0.0 0.0 48957.0 0.0 0.0 0.0 15.0 919.0 3044.0 0 t 0 18833.0 19877.0 1184.0 153.0 124.0 1670.0 0.0 31.0 867.0 17.0 0.0 1440.0 1373.0 10717.0 18415.0 0
MA0597.1_shift7 (THAP1)				; oligos_8nt_mkv6_m35 versus MA0597.1 (THAP1); m=8/12; ncol2=9; w=8; offset=4; strand=D; shift=7; score= 0.5542; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0
MA0516.2_shift0 (SP2)				; oligos_8nt_mkv6_m35 versus MA0516.2 (SP2); m=9/12; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.520777; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0
MA0685.1_shift1 (SP4)				; oligos_8nt_mkv6_m35 versus MA0685.1 (SP4); m=10/12; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.495813; -ywrGCCACGCCCmCty ; cor=; Ncor= a 0 621.0 2173.0 2600.0 939.0 260.0 2.0 3004.0 2.0 10.0 2.0 3.0 0.0 1840.0 113.0 1140.0 582.0 c 0 1405.0 156.0 146.0 6.0 4443.0 4492.0 991.0 4662.0 14.0 4681.0 4732.0 4667.0 2430.0 4276.0 897.0 1206.0 g 0 823.0 65.0 1639.0 4774.0 0.0 5.0 3.0 0.0 5444.0 4.0 2.0 3.0 9.0 21.0 234.0 363.0 t 0 1622.0 1809.0 199.0 16.0 4.0 135.0 0.0 0.0 55.0 0.0 0.0 72.0 67.0 1067.0 3043.0 2078.0
MA0738.1_shift7 (HIC2)				; oligos_8nt_mkv6_m35 versus MA0738.1 (HIC2); m=11/12; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.480024; -------rTGCCMrsy- ; cor=; Ncor= a 0 0 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 2493.0 770.0 760.0 0 c 0 0 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 710.0 2200.0 1732.0 0 g 0 0 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 1290.0 1237.0 1001.0 0 t 0 0 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 399.0 684.0 1398.0 0
MA1102.2_rc_shift0 (CTCFL_rc)				; oligos_8nt_mkv6_m35 versus MA1102.2_rc (CTCFL_rc); m=12/12; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.425755; scGCCCCCTGsy----- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0 0 0 0