One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m36/peak-motifs_oligos_8nt_mkv6_m36.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m36/peak-motifs_oligos_8nt_mkv6_m36_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m36_shift0 ; 17 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv6_m36_shift0 (oligos_8nt_mkv6_m36oligos_8nt_mkv6_m36)    
; oligos_8nt_mkv6_m36 (oligos_8nt_mkv6_m36oligos_8nt_mkv6_m36); m=0 (reference); ncol1=12; shift=0; ncol=17; ssCGGTGACGss-----
; Alignment reference
a	340	423	51	45	63	127	19	2176	35	73	375	422	0	0	0	0	0
c	979	724	2600	144	156	256	142	177	2670	111	937	1109	0	0	0	0	0
g	1180	1283	116	2628	2601	293	2669	389	73	2603	904	919	0	0	0	0	0
t	351	420	83	33	30	2174	20	108	72	63	634	400	0	0	0	0	0
MA0604.1_shift4 (Atf1)
; oligos_8nt_mkv6_m36 versus MA0604.1 (Atf1); m=1/16; ncol2=8; w=8; offset=4; strand=D; shift=4; score=0.545918; ----rTGACGTa-----
; cor=; Ncor=
a	0	0	0	0	462.0	24.0	0.0	1000.0	0.0	7.0	90.0	600.0	0	0	0	0	0
c	0	0	0	0	86.0	16.0	22.0	0.0	1000.0	0.0	198.0	138.0	0	0	0	0	0
g	0	0	0	0	387.0	0.0	803.0	0.0	0.0	993.0	0.0	163.0	0	0	0	0	0
t	0	0	0	0	65.0	960.0	175.0	0.0	0.0	0.0	712.0	100.0	0	0	0	0	0
MA1145.1_rc_shift1 (FOSL2::JUND(var.2)_rc)
; oligos_8nt_mkv6_m36 versus MA1145.1_rc (FOSL2::JUND(var.2)_rc); m=2/16; ncol2=15; w=11; offset=1; strand=R; shift=1; score=0.498998; -gcgrTGACGTmAymm-
; cor=; Ncor=
a	0	223.0	200.0	245.0	577.0	11.0	11.0	950.0	28.0	41.0	20.0	268.0	937.0	57.0	252.0	339.0	0
c	0	241.0	416.0	104.0	55.0	11.0	15.0	10.0	823.0	35.0	31.0	678.0	10.0	340.0	340.0	286.0	0
g	0	288.0	222.0	434.0	345.0	6.0	942.0	12.0	15.0	911.0	6.0	46.0	27.0	45.0	189.0	177.0	0
t	0	248.0	162.0	217.0	23.0	972.0	33.0	28.0	135.0	12.0	943.0	7.0	26.0	559.0	219.0	198.0	0
MA1131.1_shift3 (FOSL2::JUN(var.2))
; oligos_8nt_mkv6_m36 versus MA1131.1 (FOSL2::JUN(var.2)); m=3/16; ncol2=11; w=9; offset=3; strand=D; shift=3; score=0.481651; ---grTGACGTmAt---
; cor=; Ncor=
a	0	0	0	222.0	633.0	6.0	7.0	963.0	11.0	92.0	14.0	351.0	961.0	38.0	0	0	0
c	0	0	0	94.0	30.0	8.0	14.0	6.0	906.0	45.0	70.0	625.0	10.0	218.0	0	0	0
g	0	0	0	459.0	323.0	8.0	917.0	9.0	22.0	845.0	9.0	16.0	13.0	166.0	0	0	0
t	0	0	0	224.0	15.0	978.0	62.0	23.0	61.0	17.0	908.0	8.0	15.0	578.0	0	0	0
MA1127.1_shift3 (FOSB::JUN)
; oligos_8nt_mkv6_m36 versus MA1127.1 (FOSB::JUN); m=4/16; ncol2=11; w=9; offset=3; strand=D; shift=3; score=0.480357; ---gaTGACGTCAy---
; cor=; Ncor=
a	0	0	0	193.0	649.0	12.0	17.0	954.0	48.0	75.0	25.0	247.0	949.0	92.0	0	0	0
c	0	0	0	70.0	87.0	10.0	10.0	8.0	886.0	14.0	57.0	697.0	16.0	261.0	0	0	0
g	0	0	0	575.0	216.0	12.0	872.0	17.0	25.0	897.0	14.0	20.0	14.0	53.0	0	0	0
t	0	0	0	162.0	48.0	965.0	100.0	20.0	42.0	14.0	904.0	36.0	21.0	593.0	0	0	0
MA1475.1_shift3 (CREB3L4(var.2))
; oligos_8nt_mkv6_m36 versus MA1475.1 (CREB3L4(var.2)); m=5/16; ncol2=12; w=9; offset=3; strand=D; shift=3; score=0.480291; ---grTGACGTCAyc--
; cor=; Ncor=
a	0	0	0	229.0	504.0	0.0	35.0	1293.0	0.0	81.0	16.0	176.0	1293.0	116.0	234.0	0	0
c	0	0	0	224.0	221.0	138.0	265.0	27.0	1293.0	3.0	100.0	1293.0	35.0	748.0	582.0	0	0
g	0	0	0	570.0	790.0	48.0	1293.0	83.0	6.0	1293.0	36.0	227.0	153.0	282.0	265.0	0	0
t	0	0	0	270.0	75.0	1293.0	258.0	39.0	43.0	0.0	1293.0	59.0	40.0	546.0	212.0	0	0
MA0609.2_shift1 (CREM)
; oligos_8nt_mkv6_m36 versus MA0609.2 (CREM); m=6/16; ncol2=16; w=11; offset=1; strand=D; shift=1; score=0.471102; -gcrgTGACGTCAcygc
; cor=; Ncor=
a	0	3865.0	3966.0	5881.0	2936.0	559.0	434.0	15694.0	517.0	1582.0	400.0	672.0	15228.0	789.0	3757.0	3582.0	3801.0
c	0	4230.0	5521.0	2908.0	2159.0	730.0	1038.0	313.0	14031.0	901.0	622.0	14883.0	508.0	11146.0	4473.0	3957.0	5132.0
g	0	5132.0	3956.0	4474.0	11144.0	506.0	14883.0	619.0	897.0	14026.0	314.0	1039.0	730.0	2156.0	2910.0	5523.0	4230.0
t	0	3800.0	3584.0	3764.0	788.0	15232.0	672.0	401.0	1582.0	518.0	15691.0	433.0	561.0	2936.0	5887.0	3965.0	3864.0
MA0656.1_rc_shift3 (JDP2(var.2)_rc)
; oligos_8nt_mkv6_m36 versus MA0656.1_rc (JDP2(var.2)_rc); m=7/16; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.468318; ---grTGACGTCATc--
; cor=; Ncor=
a	0	0	0	3778.0	12283.0	0.0	1.0	24403.0	2.0	338.0	6.0	1939.0	24403.0	17.0	3623.0	0	0
c	0	0	0	4124.0	835.0	9.0	4.0	7.0	24403.0	6.0	6.0	24403.0	3.0	1403.0	11036.0	0	0
g	0	0	0	12117.0	12119.0	10.0	24403.0	24.0	5.0	24403.0	7.0	0.0	9.0	1319.0	5483.0	0	0
t	0	0	0	4383.0	47.0	24403.0	1777.0	15.0	587.0	5.0	24403.0	11.0	3.0	24403.0	4260.0	0	0
MA1140.2_rc_shift3 (JUNB(var.2)_rc)
; oligos_8nt_mkv6_m36 versus MA1140.2_rc (JUNB(var.2)_rc); m=8/16; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.463021; ---grTGACGTCATc--
; cor=; Ncor=
a	0	0	0	35.0	191.0	1.0	1.0	305.0	0.0	2.0	0.0	13.0	305.0	6.0	47.0	0	0
c	0	0	0	43.0	10.0	1.0	3.0	1.0	305.0	0.0	1.0	305.0	4.0	15.0	162.0	0	0
g	0	0	0	187.0	114.0	2.0	305.0	3.0	1.0	305.0	1.0	0.0	1.0	7.0	46.0	0	0
t	0	0	0	40.0	0.0	305.0	17.0	1.0	0.0	0.0	305.0	0.0	1.0	305.0	50.0	0	0
MA1474.1_rc_shift3 (CREB3L4_rc)
; oligos_8nt_mkv6_m36 versus MA1474.1_rc (CREB3L4_rc); m=9/16; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.460149; ---grTGACGTGGcr--
; cor=; Ncor=
a	0	0	0	698.0	1308.0	275.0	279.0	3891.0	0.0	130.0	8.0	221.0	246.0	1403.0	2090.0	0	0
c	0	0	0	788.0	729.0	769.0	690.0	63.0	3891.0	20.0	208.0	112.0	165.0	3891.0	959.0	0	0
g	0	0	0	1740.0	2584.0	515.0	3891.0	301.0	65.0	3891.0	50.0	3891.0	3891.0	247.0	1802.0	0	0
t	0	0	0	664.0	284.0	3891.0	500.0	53.0	306.0	13.0	3891.0	260.0	1118.0	828.0	876.0	0	0
MA0840.1_rc_shift3 (Creb5_rc)
; oligos_8nt_mkv6_m36 versus MA0840.1_rc (Creb5_rc); m=10/16; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.453768; ---rrTGACGTCATy--
; cor=; Ncor=
a	0	0	0	1126.0	1843.0	2.0	4.0	3704.0	0.0	57.0	10.0	918.0	3704.0	40.0	695.0	0	0
c	0	0	0	372.0	77.0	0.0	0.0	0.0	3704.0	0.0	1.0	3704.0	0.0	256.0	1066.0	0	0
g	0	0	0	1466.0	1861.0	0.0	3704.0	6.0	0.0	3704.0	0.0	6.0	16.0	227.0	740.0	0	0
t	0	0	0	740.0	25.0	3704.0	917.0	18.0	151.0	0.0	3704.0	13.0	6.0	3704.0	1202.0	0	0
MA0638.1_rc_shift2 (CREB3_rc)
; oligos_8nt_mkv6_m36 versus MA0638.1_rc (CREB3_rc); m=11/16; ncol2=14; w=10; offset=2; strand=R; shift=2; score=0.451765; --ygrTGACGTGkCay-
; cor=; Ncor=
a	0	0	43.0	59.0	161.0	6.0	4.0	376.0	2.0	0.0	1.0	7.0	20.0	129.0	284.0	50.0	0
c	0	0	98.0	35.0	28.0	12.0	8.0	0.0	447.0	0.0	0.0	16.0	2.0	390.0	75.0	107.0	0
g	0	0	50.0	210.0	115.0	2.0	245.0	1.0	0.0	245.0	0.0	241.0	207.0	0.0	78.0	78.0	0
t	0	0	119.0	65.0	7.0	300.0	10.0	1.0	3.0	0.0	305.0	7.0	92.0	20.0	32.0	79.0	0
MA1143.1_shift4 (FOSL1::JUND(var.2))
; oligos_8nt_mkv6_m36 versus MA1143.1 (FOSL1::JUND(var.2)); m=12/16; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.449354; ----rTGACgymay---
; cor=; Ncor=
a	0	0	0	0	561.0	36.0	39.0	870.0	32.0	116.0	117.0	546.0	645.0	123.0	0	0	0
c	0	0	0	0	75.0	50.0	101.0	45.0	835.0	59.0	262.0	330.0	66.0	401.0	0	0	0
g	0	0	0	0	324.0	44.0	777.0	41.0	64.0	649.0	39.0	83.0	100.0	82.0	0	0	0
t	0	0	0	0	40.0	870.0	82.0	44.0	68.0	176.0	582.0	41.0	188.0	394.0	0	0	0
MA0605.2_shift3 (ATF3)
; oligos_8nt_mkv6_m36 versus MA0605.2 (ATF3); m=13/16; ncol2=12; w=9; offset=3; strand=D; shift=3; score=0.447409; ---grTGACGTCAyc--
; cor=; Ncor=
a	0	0	0	8505.0	24741.0	0.0	0.0	40546.0	0.0	891.0	0.0	1520.0	40546.0	0.0	6919.0	0	0
c	0	0	0	8220.0	1354.0	0.0	0.0	0.0	40546.0	0.0	0.0	40546.0	0.0	15737.0	16820.0	0	0
g	0	0	0	16894.0	15805.0	1.0	40546.0	0.0	0.0	40546.0	0.0	0.0	0.0	1094.0	8242.0	0	0
t	0	0	0	6926.0	0.0	40546.0	1366.0	0.0	556.0	0.0	40546.0	0.0	0.0	24808.0	8564.0	0	0
MA1133.1_shift3 (JUN::JUNB(var.2))
; oligos_8nt_mkv6_m36 versus MA1133.1 (JUN::JUNB(var.2)); m=14/16; ncol2=12; w=9; offset=3; strand=D; shift=3; score=0.442693; ---krTGACGTCATb--
; cor=; Ncor=
a	0	0	0	54.0	376.0	58.0	51.0	787.0	23.0	55.0	30.0	91.0	919.0	33.0	212.0	0	0
c	0	0	0	132.0	108.0	43.0	28.0	22.0	862.0	36.0	27.0	834.0	19.0	125.0	254.0	0	0
g	0	0	0	358.0	486.0	25.0	703.0	63.0	47.0	867.0	40.0	35.0	35.0	130.0	255.0	0	0
t	0	0	0	457.0	30.0	875.0	218.0	129.0	68.0	42.0	903.0	40.0	26.0	712.0	278.0	0	0
MA1136.1_shift4 (FOSB::JUNB(var.2))
; oligos_8nt_mkv6_m36 versus MA1136.1 (FOSB::JUNB(var.2)); m=15/16; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.439982; ----rTGACGTCAy---
; cor=; Ncor=
a	0	0	0	0	561.0	30.0	13.0	869.0	30.0	52.0	56.0	173.0	923.0	11.0	0	0	0
c	0	0	0	0	59.0	36.0	46.0	44.0	842.0	35.0	80.0	776.0	16.0	260.0	0	0	0
g	0	0	0	0	368.0	16.0	700.0	60.0	27.0	893.0	28.0	36.0	30.0	65.0	0	0	0
t	0	0	0	0	12.0	917.0	242.0	28.0	101.0	20.0	836.0	15.0	31.0	664.0	0	0	0
MA1129.1_shift4 (FOSL1::JUN(var.2))
; oligos_8nt_mkv6_m36 versus MA1129.1 (FOSL1::JUN(var.2)); m=16/16; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.423203; ----rTgACGTcAy---
; cor=; Ncor=
a	0	0	0	0	639.0	28.0	33.0	825.0	22.0	93.0	41.0	238.0	917.0	24.0	0	0	0
c	0	0	0	0	69.0	30.0	56.0	26.0	845.0	36.0	105.0	670.0	22.0	264.0	0	0	0
g	0	0	0	0	266.0	24.0	672.0	106.0	38.0	847.0	27.0	58.0	31.0	71.0	0	0	0
t	0	0	0	0	26.0	919.0	240.0	43.0	95.0	24.0	827.0	35.0	30.0	641.0	0	0	0