| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_8nt_mkv6_m36_shift0 (oligos_8nt_mkv6_m36oligos_8nt_mkv6_m36) |
 |
  |
  |
; oligos_8nt_mkv6_m36 (oligos_8nt_mkv6_m36oligos_8nt_mkv6_m36); m=0 (reference); ncol1=12; shift=0; ncol=17; ssCGGTGACGss-----
; Alignment reference
a 340 423 51 45 63 127 19 2176 35 73 375 422 0 0 0 0 0
c 979 724 2600 144 156 256 142 177 2670 111 937 1109 0 0 0 0 0
g 1180 1283 116 2628 2601 293 2669 389 73 2603 904 919 0 0 0 0 0
t 351 420 83 33 30 2174 20 108 72 63 634 400 0 0 0 0 0
|
| MA0604.1_shift4 (Atf1) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA0604.1 (Atf1); m=1/16; ncol2=8; w=8; offset=4; strand=D; shift=4; score=0.545918; ----rTGACGTa-----
; cor=; Ncor=
a 0 0 0 0 462.0 24.0 0.0 1000.0 0.0 7.0 90.0 600.0 0 0 0 0 0
c 0 0 0 0 86.0 16.0 22.0 0.0 1000.0 0.0 198.0 138.0 0 0 0 0 0
g 0 0 0 0 387.0 0.0 803.0 0.0 0.0 993.0 0.0 163.0 0 0 0 0 0
t 0 0 0 0 65.0 960.0 175.0 0.0 0.0 0.0 712.0 100.0 0 0 0 0 0
|
| MA1145.1_rc_shift1 (FOSL2::JUND(var.2)_rc) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1145.1_rc (FOSL2::JUND(var.2)_rc); m=2/16; ncol2=15; w=11; offset=1; strand=R; shift=1; score=0.498998; -gcgrTGACGTmAymm-
; cor=; Ncor=
a 0 223.0 200.0 245.0 577.0 11.0 11.0 950.0 28.0 41.0 20.0 268.0 937.0 57.0 252.0 339.0 0
c 0 241.0 416.0 104.0 55.0 11.0 15.0 10.0 823.0 35.0 31.0 678.0 10.0 340.0 340.0 286.0 0
g 0 288.0 222.0 434.0 345.0 6.0 942.0 12.0 15.0 911.0 6.0 46.0 27.0 45.0 189.0 177.0 0
t 0 248.0 162.0 217.0 23.0 972.0 33.0 28.0 135.0 12.0 943.0 7.0 26.0 559.0 219.0 198.0 0
|
| MA1131.1_shift3 (FOSL2::JUN(var.2)) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1131.1 (FOSL2::JUN(var.2)); m=3/16; ncol2=11; w=9; offset=3; strand=D; shift=3; score=0.481651; ---grTGACGTmAt---
; cor=; Ncor=
a 0 0 0 222.0 633.0 6.0 7.0 963.0 11.0 92.0 14.0 351.0 961.0 38.0 0 0 0
c 0 0 0 94.0 30.0 8.0 14.0 6.0 906.0 45.0 70.0 625.0 10.0 218.0 0 0 0
g 0 0 0 459.0 323.0 8.0 917.0 9.0 22.0 845.0 9.0 16.0 13.0 166.0 0 0 0
t 0 0 0 224.0 15.0 978.0 62.0 23.0 61.0 17.0 908.0 8.0 15.0 578.0 0 0 0
|
| MA1127.1_shift3 (FOSB::JUN) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1127.1 (FOSB::JUN); m=4/16; ncol2=11; w=9; offset=3; strand=D; shift=3; score=0.480357; ---gaTGACGTCAy---
; cor=; Ncor=
a 0 0 0 193.0 649.0 12.0 17.0 954.0 48.0 75.0 25.0 247.0 949.0 92.0 0 0 0
c 0 0 0 70.0 87.0 10.0 10.0 8.0 886.0 14.0 57.0 697.0 16.0 261.0 0 0 0
g 0 0 0 575.0 216.0 12.0 872.0 17.0 25.0 897.0 14.0 20.0 14.0 53.0 0 0 0
t 0 0 0 162.0 48.0 965.0 100.0 20.0 42.0 14.0 904.0 36.0 21.0 593.0 0 0 0
|
| MA1475.1_shift3 (CREB3L4(var.2)) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1475.1 (CREB3L4(var.2)); m=5/16; ncol2=12; w=9; offset=3; strand=D; shift=3; score=0.480291; ---grTGACGTCAyc--
; cor=; Ncor=
a 0 0 0 229.0 504.0 0.0 35.0 1293.0 0.0 81.0 16.0 176.0 1293.0 116.0 234.0 0 0
c 0 0 0 224.0 221.0 138.0 265.0 27.0 1293.0 3.0 100.0 1293.0 35.0 748.0 582.0 0 0
g 0 0 0 570.0 790.0 48.0 1293.0 83.0 6.0 1293.0 36.0 227.0 153.0 282.0 265.0 0 0
t 0 0 0 270.0 75.0 1293.0 258.0 39.0 43.0 0.0 1293.0 59.0 40.0 546.0 212.0 0 0
|
| MA0609.2_shift1 (CREM) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA0609.2 (CREM); m=6/16; ncol2=16; w=11; offset=1; strand=D; shift=1; score=0.471102; -gcrgTGACGTCAcygc
; cor=; Ncor=
a 0 3865.0 3966.0 5881.0 2936.0 559.0 434.0 15694.0 517.0 1582.0 400.0 672.0 15228.0 789.0 3757.0 3582.0 3801.0
c 0 4230.0 5521.0 2908.0 2159.0 730.0 1038.0 313.0 14031.0 901.0 622.0 14883.0 508.0 11146.0 4473.0 3957.0 5132.0
g 0 5132.0 3956.0 4474.0 11144.0 506.0 14883.0 619.0 897.0 14026.0 314.0 1039.0 730.0 2156.0 2910.0 5523.0 4230.0
t 0 3800.0 3584.0 3764.0 788.0 15232.0 672.0 401.0 1582.0 518.0 15691.0 433.0 561.0 2936.0 5887.0 3965.0 3864.0
|
| MA0656.1_rc_shift3 (JDP2(var.2)_rc) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA0656.1_rc (JDP2(var.2)_rc); m=7/16; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.468318; ---grTGACGTCATc--
; cor=; Ncor=
a 0 0 0 3778.0 12283.0 0.0 1.0 24403.0 2.0 338.0 6.0 1939.0 24403.0 17.0 3623.0 0 0
c 0 0 0 4124.0 835.0 9.0 4.0 7.0 24403.0 6.0 6.0 24403.0 3.0 1403.0 11036.0 0 0
g 0 0 0 12117.0 12119.0 10.0 24403.0 24.0 5.0 24403.0 7.0 0.0 9.0 1319.0 5483.0 0 0
t 0 0 0 4383.0 47.0 24403.0 1777.0 15.0 587.0 5.0 24403.0 11.0 3.0 24403.0 4260.0 0 0
|
| MA1140.2_rc_shift3 (JUNB(var.2)_rc) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1140.2_rc (JUNB(var.2)_rc); m=8/16; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.463021; ---grTGACGTCATc--
; cor=; Ncor=
a 0 0 0 35.0 191.0 1.0 1.0 305.0 0.0 2.0 0.0 13.0 305.0 6.0 47.0 0 0
c 0 0 0 43.0 10.0 1.0 3.0 1.0 305.0 0.0 1.0 305.0 4.0 15.0 162.0 0 0
g 0 0 0 187.0 114.0 2.0 305.0 3.0 1.0 305.0 1.0 0.0 1.0 7.0 46.0 0 0
t 0 0 0 40.0 0.0 305.0 17.0 1.0 0.0 0.0 305.0 0.0 1.0 305.0 50.0 0 0
|
| MA1474.1_rc_shift3 (CREB3L4_rc) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1474.1_rc (CREB3L4_rc); m=9/16; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.460149; ---grTGACGTGGcr--
; cor=; Ncor=
a 0 0 0 698.0 1308.0 275.0 279.0 3891.0 0.0 130.0 8.0 221.0 246.0 1403.0 2090.0 0 0
c 0 0 0 788.0 729.0 769.0 690.0 63.0 3891.0 20.0 208.0 112.0 165.0 3891.0 959.0 0 0
g 0 0 0 1740.0 2584.0 515.0 3891.0 301.0 65.0 3891.0 50.0 3891.0 3891.0 247.0 1802.0 0 0
t 0 0 0 664.0 284.0 3891.0 500.0 53.0 306.0 13.0 3891.0 260.0 1118.0 828.0 876.0 0 0
|
| MA0840.1_rc_shift3 (Creb5_rc) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA0840.1_rc (Creb5_rc); m=10/16; ncol2=12; w=9; offset=3; strand=R; shift=3; score=0.453768; ---rrTGACGTCATy--
; cor=; Ncor=
a 0 0 0 1126.0 1843.0 2.0 4.0 3704.0 0.0 57.0 10.0 918.0 3704.0 40.0 695.0 0 0
c 0 0 0 372.0 77.0 0.0 0.0 0.0 3704.0 0.0 1.0 3704.0 0.0 256.0 1066.0 0 0
g 0 0 0 1466.0 1861.0 0.0 3704.0 6.0 0.0 3704.0 0.0 6.0 16.0 227.0 740.0 0 0
t 0 0 0 740.0 25.0 3704.0 917.0 18.0 151.0 0.0 3704.0 13.0 6.0 3704.0 1202.0 0 0
|
| MA0638.1_rc_shift2 (CREB3_rc) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA0638.1_rc (CREB3_rc); m=11/16; ncol2=14; w=10; offset=2; strand=R; shift=2; score=0.451765; --ygrTGACGTGkCay-
; cor=; Ncor=
a 0 0 43.0 59.0 161.0 6.0 4.0 376.0 2.0 0.0 1.0 7.0 20.0 129.0 284.0 50.0 0
c 0 0 98.0 35.0 28.0 12.0 8.0 0.0 447.0 0.0 0.0 16.0 2.0 390.0 75.0 107.0 0
g 0 0 50.0 210.0 115.0 2.0 245.0 1.0 0.0 245.0 0.0 241.0 207.0 0.0 78.0 78.0 0
t 0 0 119.0 65.0 7.0 300.0 10.0 1.0 3.0 0.0 305.0 7.0 92.0 20.0 32.0 79.0 0
|
| MA1143.1_shift4 (FOSL1::JUND(var.2)) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1143.1 (FOSL1::JUND(var.2)); m=12/16; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.449354; ----rTGACgymay---
; cor=; Ncor=
a 0 0 0 0 561.0 36.0 39.0 870.0 32.0 116.0 117.0 546.0 645.0 123.0 0 0 0
c 0 0 0 0 75.0 50.0 101.0 45.0 835.0 59.0 262.0 330.0 66.0 401.0 0 0 0
g 0 0 0 0 324.0 44.0 777.0 41.0 64.0 649.0 39.0 83.0 100.0 82.0 0 0 0
t 0 0 0 0 40.0 870.0 82.0 44.0 68.0 176.0 582.0 41.0 188.0 394.0 0 0 0
|
| MA0605.2_shift3 (ATF3) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA0605.2 (ATF3); m=13/16; ncol2=12; w=9; offset=3; strand=D; shift=3; score=0.447409; ---grTGACGTCAyc--
; cor=; Ncor=
a 0 0 0 8505.0 24741.0 0.0 0.0 40546.0 0.0 891.0 0.0 1520.0 40546.0 0.0 6919.0 0 0
c 0 0 0 8220.0 1354.0 0.0 0.0 0.0 40546.0 0.0 0.0 40546.0 0.0 15737.0 16820.0 0 0
g 0 0 0 16894.0 15805.0 1.0 40546.0 0.0 0.0 40546.0 0.0 0.0 0.0 1094.0 8242.0 0 0
t 0 0 0 6926.0 0.0 40546.0 1366.0 0.0 556.0 0.0 40546.0 0.0 0.0 24808.0 8564.0 0 0
|
| MA1133.1_shift3 (JUN::JUNB(var.2)) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1133.1 (JUN::JUNB(var.2)); m=14/16; ncol2=12; w=9; offset=3; strand=D; shift=3; score=0.442693; ---krTGACGTCATb--
; cor=; Ncor=
a 0 0 0 54.0 376.0 58.0 51.0 787.0 23.0 55.0 30.0 91.0 919.0 33.0 212.0 0 0
c 0 0 0 132.0 108.0 43.0 28.0 22.0 862.0 36.0 27.0 834.0 19.0 125.0 254.0 0 0
g 0 0 0 358.0 486.0 25.0 703.0 63.0 47.0 867.0 40.0 35.0 35.0 130.0 255.0 0 0
t 0 0 0 457.0 30.0 875.0 218.0 129.0 68.0 42.0 903.0 40.0 26.0 712.0 278.0 0 0
|
| MA1136.1_shift4 (FOSB::JUNB(var.2)) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1136.1 (FOSB::JUNB(var.2)); m=15/16; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.439982; ----rTGACGTCAy---
; cor=; Ncor=
a 0 0 0 0 561.0 30.0 13.0 869.0 30.0 52.0 56.0 173.0 923.0 11.0 0 0 0
c 0 0 0 0 59.0 36.0 46.0 44.0 842.0 35.0 80.0 776.0 16.0 260.0 0 0 0
g 0 0 0 0 368.0 16.0 700.0 60.0 27.0 893.0 28.0 36.0 30.0 65.0 0 0 0
t 0 0 0 0 12.0 917.0 242.0 28.0 101.0 20.0 836.0 15.0 31.0 664.0 0 0 0
|
| MA1129.1_shift4 (FOSL1::JUN(var.2)) |
 |
|
|
; oligos_8nt_mkv6_m36 versus MA1129.1 (FOSL1::JUN(var.2)); m=16/16; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.423203; ----rTgACGTcAy---
; cor=; Ncor=
a 0 0 0 0 639.0 28.0 33.0 825.0 22.0 93.0 41.0 238.0 917.0 24.0 0 0 0
c 0 0 0 0 69.0 30.0 56.0 26.0 845.0 36.0 105.0 670.0 22.0 264.0 0 0 0
g 0 0 0 0 266.0 24.0 672.0 106.0 38.0 847.0 27.0 58.0 31.0 71.0 0 0 0
t 0 0 0 0 26.0 919.0 240.0 43.0 95.0 24.0 827.0 35.0 30.0 641.0 0 0 0
|