One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m37/peak-motifs_oligos_8nt_mkv6_m37.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m37/peak-motifs_oligos_8nt_mkv6_m37_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m37_shift3 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m37_shift3 (oligos_8nt_mkv6_m37oligos_8nt_mkv6_m37)
; oligos_8nt_mkv6_m37 (oligos_8nt_mkv6_m37oligos_8nt_mkv6_m37); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGCaCGCGss ; Alignment reference a 0 0 0 607 856 65 175 52 3370 72 143 45 171 533 928 c 0 0 0 2404 1509 5274 235 5255 704 4977 165 5231 235 2874 1717 g 0 0 0 1605 2684 148 5091 224 1204 300 5176 155 5081 1486 2243 t 0 0 0 949 516 78 64 34 287 216 81 134 78 672 677

MA0506.1_rc_shift3 (NRF1_rc)
; oligos_8nt_mkv6_m37 versus MA0506.1_rc (NRF1_rc); m=1/9; ncol2=11; w=11; offset=0; strand=R; shift=3; score=0.791464; ---yGCGCAkGCGC- ; cor=; Ncor= a 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 0 c 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 0 g 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 0 t 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0 0

MA1099.2_rc_shift5 (HES1_rc)
; oligos_8nt_mkv6_m37 versus MA1099.2_rc (HES1_rc); m=2/9; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.640864; -----gvCACGyGcc ; cor=; Ncor= a 0 0 0 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 c 0 0 0 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 g 0 0 0 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 t 0 0 0 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0

MA1560.1_shift5 (SOHLH2)
; oligos_8nt_mkv6_m37 versus MA1560.1 (SOHLH2); m=3/9; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.609353; -----ygCACGTGcr ; cor=; Ncor= a 0 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 c 0 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 g 0 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 t 0 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0

MA0162.4_shift2 (EGR1)
; oligos_8nt_mkv6_m37 versus MA0162.4 (EGR1); m=4/9; ncol2=14; w=12; offset=-1; strand=D; shift=2; score=0.606143; --ccmCGCCCACgCm ; cor=; Ncor= a 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 c 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 g 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 t 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0

MA0632.2_shift6 (TCFL5)
; oligos_8nt_mkv6_m37 versus MA0632.2 (TCFL5); m=5/9; ncol2=10; w=9; offset=3; strand=D; shift=6; score=0.598273; ------kCrCGCGCm ; cor=; Ncor= a 0 0 0 0 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 c 0 0 0 0 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 g 0 0 0 0 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 t 0 0 0 0 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0

MA0616.2_rc_shift5 (HES2_rc)
; oligos_8nt_mkv6_m37 versus MA0616.2_rc (HES2_rc); m=6/9; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.589765; -----grCACGTGcC ; cor=; Ncor= a 0 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 c 0 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 g 0 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 t 0 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0

MA1650.1_shift0 (ZBTB14)
; oligos_8nt_mkv6_m37 versus MA1650.1 (ZBTB14); m=7/9; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.480696; ssCCGCGCACss--- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0 0

MA0259.1_rc_shift6 (ARNT::HIF1A_rc)
; oligos_8nt_mkv6_m37 versus MA0259.1_rc (ARNT::HIF1A_rc); m=8/9; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.478054; ------gCACGTvb- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 0.0 104.0 0.0 1.0 1.0 31.0 0.0 0 c 0 0 0 0 0 0 20.0 104.0 0.0 104.0 0.0 23.0 34.0 49.0 0 g 0 0 0 0 0 0 51.0 0.0 0.0 0.0 103.0 2.0 29.0 28.0 0 t 0 0 0 0 0 0 18.0 0.0 0.0 0.0 0.0 78.0 10.0 27.0 0

MA0006.1_rc_shift7 (Ahr::Arnt_rc)
; oligos_8nt_mkv6_m37 versus MA0006.1_rc (Ahr::Arnt_rc); m=9/9; ncol2=6; w=6; offset=4; strand=R; shift=7; score=0.444054; -------CACGCr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 c 0 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m37_shift3 (oligos_8nt_mkv6_m37oligos_8nt_mkv6_m37)				; oligos_8nt_mkv6_m37 (oligos_8nt_mkv6_m37oligos_8nt_mkv6_m37); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGCaCGCGss ; Alignment reference a 0 0 0 607 856 65 175 52 3370 72 143 45 171 533 928 c 0 0 0 2404 1509 5274 235 5255 704 4977 165 5231 235 2874 1717 g 0 0 0 1605 2684 148 5091 224 1204 300 5176 155 5081 1486 2243 t 0 0 0 949 516 78 64 34 287 216 81 134 78 672 677
MA0506.1_rc_shift3 (NRF1_rc)				; oligos_8nt_mkv6_m37 versus MA0506.1_rc (NRF1_rc); m=1/9; ncol2=11; w=11; offset=0; strand=R; shift=3; score=0.791464; ---yGCGCAkGCGC- ; cor=; Ncor= a 0 0 0 0.0 0.0 0.0 286.0 0.0 3693.0 313.0 140.0 0.0 0.0 0.0 0 c 0 0 0 1575.0 0.0 4275.0 0.0 4624.0 528.0 935.0 468.0 4239.0 0.0 3647.0 0 g 0 0 0 804.0 4550.0 349.0 4338.0 0.0 403.0 1862.0 4016.0 189.0 4001.0 375.0 0 t 0 0 0 2245.0 74.0 0.0 0.0 0.0 0.0 1514.0 0.0 196.0 623.0 602.0 0
MA1099.2_rc_shift5 (HES1_rc)				; oligos_8nt_mkv6_m37 versus MA1099.2_rc (HES1_rc); m=2/9; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.640864; -----gvCACGyGcc ; cor=; Ncor= a 0 0 0 0 0 3216.0 4837.0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 c 0 0 0 0 0 6013.0 6360.0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 g 0 0 0 0 0 12513.0 6203.0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 t 0 0 0 0 0 2742.0 1126.0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0
MA1560.1_shift5 (SOHLH2)				; oligos_8nt_mkv6_m37 versus MA1560.1 (SOHLH2); m=3/9; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.609353; -----ygCACGTGcr ; cor=; Ncor= a 0 0 0 0 0 230.0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 381.0 c 0 0 0 0 0 485.0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 239.0 g 0 0 0 0 0 184.0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 369.0 t 0 0 0 0 0 313.0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 224.0
MA0162.4_shift2 (EGR1)				; oligos_8nt_mkv6_m37 versus MA0162.4 (EGR1); m=4/9; ncol2=14; w=12; offset=-1; strand=D; shift=2; score=0.606143; --ccmCGCCCACgCm ; cor=; Ncor= a 0 0 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 c 0 0 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 g 0 0 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 t 0 0 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0
MA0632.2_shift6 (TCFL5)				; oligos_8nt_mkv6_m37 versus MA0632.2 (TCFL5); m=5/9; ncol2=10; w=9; offset=3; strand=D; shift=6; score=0.598273; ------kCrCGCGCm ; cor=; Ncor= a 0 0 0 0 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 72543.0 c 0 0 0 0 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 44394.0 g 0 0 0 0 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 19096.0 t 0 0 0 0 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 25921.0
MA0616.2_rc_shift5 (HES2_rc)				; oligos_8nt_mkv6_m37 versus MA0616.2_rc (HES2_rc); m=6/9; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.589765; -----grCACGTGcC ; cor=; Ncor= a 0 0 0 0 0 1319.0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 c 0 0 0 0 0 1735.0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 g 0 0 0 0 0 4464.0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 t 0 0 0 0 0 966.0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0
MA1650.1_shift0 (ZBTB14)				; oligos_8nt_mkv6_m37 versus MA1650.1 (ZBTB14); m=7/9; ncol2=12; w=9; offset=-3; strand=D; shift=0; score=0.480696; ssCCGCGCACss--- ; cor=; Ncor= a 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 970.0 442.0 0 0 0 c 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 1618.0 2260.0 0 0 0 g 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 1451.0 1239.0 0 0 0 t 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 508.0 606.0 0 0 0
MA0259.1_rc_shift6 (ARNT::HIF1A_rc)				; oligos_8nt_mkv6_m37 versus MA0259.1_rc (ARNT::HIF1A_rc); m=8/9; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.478054; ------gCACGTvb- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 0.0 104.0 0.0 1.0 1.0 31.0 0.0 0 c 0 0 0 0 0 0 20.0 104.0 0.0 104.0 0.0 23.0 34.0 49.0 0 g 0 0 0 0 0 0 51.0 0.0 0.0 0.0 103.0 2.0 29.0 28.0 0 t 0 0 0 0 0 0 18.0 0.0 0.0 0.0 0.0 78.0 10.0 27.0 0
MA0006.1_rc_shift7 (Ahr::Arnt_rc)				; oligos_8nt_mkv6_m37 versus MA0006.1_rc (Ahr::Arnt_rc); m=9/9; ncol2=6; w=6; offset=4; strand=R; shift=7; score=0.444054; -------CACGCr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 c 0 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0