Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m41/peak-motifs_oligos_8nt_mkv6_m41.tf
		file1	1	12	2647
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv6_m41 MA0018.4 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 CREB1 0.989 0.913 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv6_m41 MA0605.2 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 ATF3 0.875 0.875 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv6_m41 MA1475.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 CREB3L4(var.2) 0.864 0.864 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv6_m41 MA1139.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 FOSL2::JUNB(var.2) 0.861 0.861 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv6_m41 MA0656.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 JDP2(var.2) 0.849 0.849 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv6_m41 MA1133.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 JUN::JUNB(var.2) 0.842 0.842 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv6_m41 MA1632.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 ATF2 0.909 0.839 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv6_m41 MA1140.2 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 JUNB(var.2) 0.836 0.836 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_8nt_mkv6_m41 MA0840.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 Creb5 0.835 0.835 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv6_m41 MA1131.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 FOSL2::JUN(var.2) 0.861 0.789 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_8nt_mkv6_m41 MA1127.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 FOSB::JUN 0.854 0.783 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_8nt_mkv6_m41 MA0834.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 ATF7 0.839 0.719 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_8nt_mkv6_m41 MA0492.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 JUND(var.2) 0.897 0.718 12 15 12 15 0.8000 1.0000 0.8000 R 0
oligos_8nt_mkv6_m41 MA1136.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 FOSB::JUNB(var.2) 0.856 0.713 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_8nt_mkv6_m41 MA0488.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 JUN 0.903 0.710 12 13 11 14 0.7857 0.9167 0.8462 R 1
oligos_8nt_mkv6_m41 MA1145.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 FOSL2::JUND(var.2) 0.882 0.706 12 15 12 15 0.8000 1.0000 0.8000 D -1
oligos_8nt_mkv6_m41 MA1129.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 FOSL1::JUN(var.2) 0.837 0.697 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_8nt_mkv6_m41 MA0609.2 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 CREM 0.879 0.660 12 16 12 16 0.7500 1.0000 0.7500 D -2
oligos_8nt_mkv6_m41 MA1143.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 FOSL1::JUND(var.2) 0.790 0.658 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_8nt_mkv6_m41 MA1126.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 FOS::JUN(var.2) 0.862 0.647 12 16 12 16 0.7500 1.0000 0.7500 D 0
oligos_8nt_mkv6_m41 MA0775.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 MEIS3 0.764 0.509 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv6_m41 MA0498.2 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 MEIS1 0.850 0.496 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_8nt_mkv6_m41 MA0774.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 MEIS2 0.714 0.476 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv6_m41 MA0604.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 Atf1 0.710 0.473 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv6_m41 MA1470.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 BACH2(var.2) 0.764 0.459 12 20 12 20 0.6000 1.0000 0.6000 R -4
oligos_8nt_mkv6_m41 MA0067.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 Pax2 0.837 0.451 12 8 7 13 0.5385 0.5833 0.8750 R -1
oligos_8nt_mkv6_m41 MA1576.1 oligos_8nt_mkv6_m41oligos_8nt_mkv6_m41 THRB(var.3) 0.736 0.405 12 19 11 20 0.5500 0.9167 0.5789 D 1 
 Host name	pedagogix
 Job started	2020-04-14.163801
 Job done	2020-04-14.163837
 Seconds	5.98
	user	5.98
	system	0.7
	cuser	27.3
;	csystem	1.67