Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43.tf
		file1	1	13	2532
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv6_m43 MA0695.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 ZBTB7C 0.785 0.724 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_8nt_mkv6_m43 MA0162.4 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 EGR1 0.753 0.699 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_8nt_mkv6_m43 MA0694.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 ZBTB7B 0.749 0.691 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_8nt_mkv6_m43 MA1564.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 SP9 0.867 0.578 13 12 10 15 0.6667 0.7692 0.8333 D -2
oligos_8nt_mkv6_m43 MA1650.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 ZBTB14 0.735 0.578 13 12 11 14 0.7857 0.8462 0.9167 D -1
oligos_8nt_mkv6_m43 MA0747.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 SP8 0.805 0.537 13 12 10 15 0.6667 0.7692 0.8333 D -2
oligos_8nt_mkv6_m43 MA0746.2 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 SP3 0.833 0.521 13 13 10 16 0.6250 0.7692 0.7692 D -3
oligos_8nt_mkv6_m43 MA1512.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF11 0.860 0.516 13 11 9 15 0.6000 0.6923 0.8182 D -2
oligos_8nt_mkv6_m43 MA0740.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF14 0.725 0.499 13 14 11 16 0.6875 0.8462 0.7857 D -3
oligos_8nt_mkv6_m43 MA1513.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF15 0.826 0.496 13 11 9 15 0.6000 0.6923 0.8182 D -2
oligos_8nt_mkv6_m43 MA0741.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF16 0.820 0.492 13 11 9 15 0.6000 0.6923 0.8182 D -2
oligos_8nt_mkv6_m43 MA0685.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 SP4 0.720 0.480 13 17 12 18 0.6667 0.9231 0.7059 D -5
oligos_8nt_mkv6_m43 MA0079.4 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 SP1 0.829 0.460 13 15 10 18 0.5556 0.7692 0.6667 D -5
oligos_8nt_mkv6_m43 MA1578.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 VEZF1 0.702 0.452 13 10 9 14 0.6429 0.6923 0.9000 D 4
oligos_8nt_mkv6_m43 MA0516.2 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 SP2 0.768 0.445 13 17 11 19 0.5789 0.8462 0.6471 D -6
oligos_8nt_mkv6_m43 MA0599.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF5 0.833 0.444 13 10 8 15 0.5333 0.6154 0.8000 D -2
oligos_8nt_mkv6_m43 MA1515.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF2 0.879 0.440 13 11 8 16 0.5000 0.6154 0.7273 D -3
oligos_8nt_mkv6_m43 MA1511.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF10 0.732 0.439 13 11 9 15 0.6000 0.6923 0.8182 D -2
oligos_8nt_mkv6_m43 MA1516.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF3 0.872 0.436 13 11 8 16 0.5000 0.6154 0.7273 D -3
oligos_8nt_mkv6_m43 MA1517.1 oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43 KLF6 0.854 0.427 13 11 8 16 0.5000 0.6154 0.7273 D -3 
 Host name	pedagogix
 Job started	2020-04-14.163859
 Job done	2020-04-14.163921
 Seconds	3.85
	user	3.85
	system	0.37
	cuser	17.34
;	csystem	1.14