One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m43/peak-motifs_oligos_8nt_mkv6_m43_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m43_shift6 ; 21 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv6_m43_shift6 (oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43)    
; oligos_8nt_mkv6_m43 (oligos_8nt_mkv6_m43oligos_8nt_mkv6_m43); m=0 (reference); ncol1=13; shift=6; ncol=19; ------ssCGCCCACCGss
; Alignment reference
a	0	0	0	0	0	0	325	397	36	73	21	44	31	1895	18	94	118	316	367
c	0	0	0	0	0	0	1170	1174	2414	100	2325	2342	2416	145	2334	2279	169	1158	1014
g	0	0	0	0	0	0	674	666	46	2282	150	101	48	295	151	91	2083	730	770
t	0	0	0	0	0	0	363	295	36	77	36	45	37	197	29	68	162	328	381
MA0695.1_shift7 (ZBTB7C)
; oligos_8nt_mkv6_m43 versus MA0695.1 (ZBTB7C); m=1/20; ncol2=12; w=12; offset=1; strand=D; shift=7; score= 0.7242; -------rcgACCACCgam
; cor=; Ncor=
a	0	0	0	0	0	0	0	272.0	183.0	351.0	1018.0	39.0	0.0	1018.0	18.0	90.0	253.0	1018.0	333.0
c	0	0	0	0	0	0	0	118.0	1018.0	128.0	225.0	1018.0	1018.0	269.0	1018.0	1018.0	138.0	444.0	315.0
g	0	0	0	0	0	0	0	463.0	215.0	1018.0	8.0	0.0	5.0	8.0	7.0	54.0	527.0	251.0	196.0
t	0	0	0	0	0	0	0	164.0	110.0	137.0	24.0	0.0	14.0	10.0	17.0	90.0	100.0	419.0	174.0
MA0162.4_shift5 (EGR1)
; oligos_8nt_mkv6_m43 versus MA0162.4 (EGR1); m=2/20; ncol2=14; w=13; offset=-1; strand=D; shift=5; score=0.699489; -----ccmCGCCCACgCms
; cor=; Ncor=
a	0	0	0	0	0	7087.0	3997.0	14508.0	642.0	5110.0	227.0	1440.0	314.0	22297.0	153.0	4696.0	969.0	8903.0	3809.0
c	0	0	0	0	0	11610.0	14749.0	10303.0	28403.0	1131.0	29338.0	27321.0	28958.0	5420.0	29507.0	2806.0	25196.0	10441.0	13686.0
g	0	0	0	0	0	6621.0	7211.0	3854.0	756.0	22237.0	665.0	1455.0	698.0	2122.0	699.0	20544.0	2157.0	6345.0	7852.0
t	0	0	0	0	0	5280.0	4641.0	1933.0	797.0	2120.0	368.0	382.0	628.0	759.0	239.0	2552.0	2276.0	4909.0	5251.0
MA0694.1_shift7 (ZBTB7B)
; oligos_8nt_mkv6_m43 versus MA0694.1 (ZBTB7B); m=3/20; ncol2=12; w=12; offset=1; strand=D; shift=7; score=0.691389; -------rCGACCMCCgaa
; cor=; Ncor=
a	0	0	0	0	0	0	0	533.0	144.0	394.0	1852.0	5.0	0.0	1852.0	5.0	0.0	803.0	1852.0	996.0
c	0	0	0	0	0	0	0	159.0	1852.0	19.0	238.0	1852.0	1852.0	820.0	1852.0	1852.0	474.0	295.0	309.0
g	0	0	0	0	0	0	0	795.0	224.0	1852.0	0.0	1.0	2.0	2.0	0.0	0.0	1852.0	221.0	245.0
t	0	0	0	0	0	0	0	365.0	54.0	78.0	3.0	0.0	0.0	3.0	1.0	7.0	305.0	365.0	302.0
MA1564.1_shift4 (SP9)
; oligos_8nt_mkv6_m43 versus MA1564.1 (SP9); m=4/20; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.578165; ----rcCmCGCCCmcy---
; cor=; Ncor=
a	0	0	0	0	834.0	566.0	321.0	2451.0	2.0	211.0	22.0	0.0	39.0	1192.0	188.0	420.0	0	0	0
c	0	0	0	0	440.0	2451.0	2451.0	1127.0	2451.0	200.0	2451.0	2451.0	2451.0	1259.0	1863.0	1167.0	0	0	0
g	0	0	0	0	952.0	309.0	113.0	56.0	17.0	2451.0	0.0	0.0	24.0	38.0	191.0	204.0	0	0	0
t	0	0	0	0	226.0	518.0	284.0	96.0	9.0	173.0	14.0	30.0	412.0	353.0	588.0	660.0	0	0	0
MA1650.1_shift5 (ZBTB14)
; oligos_8nt_mkv6_m43 versus MA1650.1 (ZBTB14); m=5/20; ncol2=12; w=11; offset=-1; strand=D; shift=5; score=0.577868; -----ssCCGCGCACss--
; cor=; Ncor=
a	0	0	0	0	0	570.0	501.0	335.0	41.0	93.0	68.0	132.0	56.0	4500.0	99.0	970.0	442.0	0	0
c	0	0	0	0	0	1779.0	1972.0	3525.0	4292.0	294.0	4078.0	305.0	4178.0	37.0	3674.0	1618.0	2260.0	0	0
g	0	0	0	0	0	1668.0	1555.0	614.0	155.0	4098.0	319.0	4043.0	261.0	10.0	651.0	1451.0	1239.0	0	0
t	0	0	0	0	0	530.0	519.0	73.0	59.0	62.0	82.0	67.0	52.0	0.0	123.0	508.0	606.0	0	0
MA0747.1_shift4 (SP8)
; oligos_8nt_mkv6_m43 versus MA0747.1 (SP8); m=6/20; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.536906; ----rmCACgCCCmCy---
; cor=; Ncor=
a	0	0	0	0	52.0	54.0	25.0	133.0	7.0	25.0	5.0	2.0	0.0	90.0	13.0	31.0	0	0	0
c	0	0	0	0	27.0	113.0	167.0	33.0	167.0	37.0	167.0	167.0	167.0	77.0	167.0	52.0	0	0	0
g	0	0	0	0	78.0	0.0	0.0	1.0	1.0	167.0	6.0	3.0	4.0	6.0	21.0	1.0	0	0	0
t	0	0	0	0	10.0	4.0	13.0	2.0	5.0	39.0	2.0	0.0	15.0	3.0	39.0	82.0	0	0	0
MA0746.2_shift3 (SP3)
; oligos_8nt_mkv6_m43 versus MA0746.2 (SP3); m=7/20; ncol2=13; w=10; offset=-3; strand=D; shift=3; score=0.520775; ---srCCACGCCCmCy---
; cor=; Ncor=
a	0	0	0	1267.0	2146.0	664.0	160.0	5253.0	6.0	465.0	0.0	0.0	2.0	3430.0	556.0	1516.0	0	0	0
c	0	0	0	1884.0	531.0	6591.0	6591.0	1338.0	6591.0	0.0	6591.0	6591.0	6591.0	3160.0	5116.0	2608.0	0	0	0
g	0	0	0	1895.0	4445.0	226.0	54.0	2.0	0.0	6591.0	0.0	0.0	2.0	39.0	297.0	524.0	0	0	0
t	0	0	0	1545.0	421.0	345.0	202.0	11.0	12.0	504.0	0.0	9.0	718.0	552.0	1475.0	1943.0	0	0	0
MA1512.1_shift4 (KLF11)
; oligos_8nt_mkv6_m43 versus MA1512.1 (KLF11); m=8/20; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.515875; ----gcCACGCCCmC----
; cor=; Ncor=
a	0	0	0	0	1882.0	2022.0	650.0	8655.0	0.0	2426.0	11.0	1.0	0.0	4689.0	581.0	0	0	0	0
c	0	0	0	0	2054.0	5549.0	8662.0	1289.0	9142.0	52.0	9161.0	9166.0	8941.0	4226.0	8403.0	0	0	0	0
g	0	0	0	0	3930.0	401.0	156.0	115.0	0.0	8291.0	18.0	20.0	4.0	69.0	358.0	0	0	0	0
t	0	0	0	0	1299.0	1192.0	506.0	27.0	38.0	349.0	23.0	7.0	885.0	761.0	1281.0	0	0	0	0
MA0740.1_shift3 (KLF14)
; oligos_8nt_mkv6_m43 versus MA0740.1 (KLF14); m=9/20; ncol2=14; w=11; offset=-3; strand=D; shift=3; score=0.498559; ---krcCACGCCCmYyt--
; cor=; Ncor=
a	0	0	0	430.0	1205.0	526.0	0.0	1708.0	2.0	69.0	0.0	0.0	0.0	716.0	32.0	280.0	649.0	0	0
c	0	0	0	215.0	73.0	1360.0	1599.0	136.0	1596.0	36.0	1602.0	1604.0	1609.0	961.0	1463.0	594.0	741.0	0	0
g	0	0	0	966.0	2280.0	96.0	10.0	58.0	0.0	2939.0	3.0	3.0	4.0	1.0	15.0	89.0	314.0	0	0
t	0	0	0	693.0	71.0	404.0	248.0	5.0	2.0	31.0	0.0	6.0	65.0	31.0	559.0	1041.0	1670.0	0	0
MA1513.1_shift4 (KLF15)
; oligos_8nt_mkv6_m43 versus MA1513.1 (KLF15); m=10/20; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.495611; ----scCCCGCCCcs----
; cor=; Ncor=
a	0	0	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0	0	0	0
c	0	0	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0	0	0	0
g	0	0	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0	0	0	0
t	0	0	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0	0	0	0
MA0741.1_shift4 (KLF16)
; oligos_8nt_mkv6_m43 versus MA0741.1 (KLF16); m=11/20; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.492028; ----gmCMCgCCCMC----
; cor=; Ncor=
a	0	0	0	0	666.0	901.0	62.0	1150.0	66.0	497.0	8.0	2.0	16.0	437.0	32.0	0	0	0	0
c	0	0	0	0	535.0	1612.0	1612.0	461.0	1612.0	173.0	1612.0	1612.0	1612.0	1175.0	1612.0	0	0	0	0
g	0	0	0	0	1612.0	77.0	6.0	32.0	17.0	1612.0	0.0	8.0	3.0	19.0	23.0	0	0	0	0
t	0	0	0	0	240.0	116.0	45.0	0.0	19.0	403.0	0.0	0.0	97.0	40.0	370.0	0	0	0	0
MA0685.1_shift1 (SP4)
; oligos_8nt_mkv6_m43 versus MA0685.1 (SP4); m=12/20; ncol2=17; w=12; offset=-5; strand=D; shift=1; score=0.479752; -ywrGCCACGCCCmCtyy-
; cor=; Ncor=
a	0	621.0	2173.0	2600.0	939.0	260.0	2.0	3004.0	2.0	10.0	2.0	3.0	0.0	1840.0	113.0	1140.0	582.0	967.0	0
c	0	1405.0	156.0	146.0	6.0	4443.0	4492.0	991.0	4662.0	14.0	4681.0	4732.0	4667.0	2430.0	4276.0	897.0	1206.0	1180.0	0
g	0	823.0	65.0	1639.0	4774.0	0.0	5.0	3.0	0.0	5444.0	4.0	2.0	3.0	9.0	21.0	234.0	363.0	556.0	0
t	0	1622.0	1809.0	199.0	16.0	4.0	135.0	0.0	0.0	55.0	0.0	0.0	72.0	67.0	1067.0	3043.0	2078.0	1509.0	0
MA0079.4_shift1 (SP1)
; oligos_8nt_mkv6_m43 versus MA0079.4 (SP1); m=13/20; ncol2=15; w=10; offset=-5; strand=D; shift=1; score=0.460457; -ywrRCCACGCCCmCh---
; cor=; Ncor=
a	0	7866.0	28233.0	28895.0	14584.0	962.0	55.0	42154.0	0.0	959.0	0.0	8.0	0.0	24666.0	1195.0	12598.0	0	0	0
c	0	13273.0	1872.0	1530.0	0.0	48854.0	49649.0	12672.0	49660.0	0.0	49666.0	49662.0	48772.0	24196.0	37612.0	15606.0	0	0	0
g	0	9691.0	999.0	19477.0	37543.0	82.0	0.0	0.0	0.0	48957.0	0.0	0.0	0.0	15.0	919.0	3044.0	0	0	0
t	0	18833.0	19877.0	1184.0	153.0	124.0	1670.0	0.0	31.0	867.0	17.0	0.0	1440.0	1373.0	10717.0	18415.0	0	0	0
MA1578.1_shift10 (VEZF1)
; oligos_8nt_mkv6_m43 versus MA1578.1 (VEZF1); m=14/20; ncol2=10; w=9; offset=4; strand=D; shift=10; score=0.451596; ----------CCCCCCmyt
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	71.0	1.0	4.0	2.0	6.0	10.0	406.0	44.0	240.0
c	0	0	0	0	0	0	0	0	0	0	790.0	997.0	995.0	997.0	989.0	977.0	357.0	550.0	171.0
g	0	0	0	0	0	0	0	0	0	0	137.0	0.0	0.0	0.0	0.0	3.0	110.0	70.0	211.0
t	0	0	0	0	0	0	0	0	0	0	0.0	0.0	0.0	0.0	4.0	8.0	125.0	334.0	377.0
MA0516.2_shift0 (SP2)
; oligos_8nt_mkv6_m43 versus MA0516.2 (SP2); m=15/20; ncol2=17; w=11; offset=-6; strand=D; shift=0; score= 0.4449; mTAAGyCCCGCCCmCyy--
; cor=; Ncor=
a	256.0	53.0	613.0	753.0	54.0	34.0	14.0	16.0	4.0	82.0	0.0	5.0	23.0	402.0	22.0	109.0	150.0	0	0
c	308.0	171.0	76.0	84.0	127.0	456.0	774.0	786.0	788.0	52.0	795.0	793.0	774.0	390.0	679.0	221.0	203.0	0	0
g	123.0	57.0	0.0	33.0	791.0	8.0	1.0	13.0	22.0	780.0	0.0	26.0	0.0	22.0	1.0	0.0	88.0	0	0
t	106.0	608.0	180.0	67.0	43.0	327.0	0.0	8.0	12.0	45.0	18.0	7.0	27.0	17.0	101.0	503.0	352.0	0	0
MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv6_m43 versus MA0599.1 (KLF5); m=16/20; ncol2=10; w=8; offset=-2; strand=D; shift=4; score=0.444382; ----gCCMCrCCCh-----
; cor=; Ncor=
a	0	0	0	0	1429.0	0.0	0.0	3477.0	0.0	5051.0	0.0	0.0	0.0	3915.0	0	0	0	0	0
c	0	0	0	0	2023.0	11900.0	12008.0	9569.0	13611.0	0.0	13611.0	13611.0	13135.0	5595.0	0	0	0	0	0
g	0	0	0	0	7572.0	0.0	0.0	0.0	0.0	5182.0	0.0	0.0	0.0	0.0	0	0	0	0	0
t	0	0	0	0	2587.0	1711.0	1603.0	565.0	0.0	3378.0	0.0	0.0	476.0	4101.0	0	0	0	0	0
MA1515.1_shift3 (KLF2)
; oligos_8nt_mkv6_m43 versus MA1515.1 (KLF2); m=17/20; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.43968; ---srCCmCrCCCw-----
; cor=; Ncor=
a	0	0	0	1054.0	2510.0	741.0	403.0	4622.0	0.0	1702.0	0.0	128.0	68.0	1838.0	0	0	0	0	0
c	0	0	0	1376.0	1103.0	4622.0	4622.0	2265.0	4622.0	274.0	4622.0	4622.0	4622.0	1142.0	0	0	0	0	0
g	0	0	0	1320.0	2112.0	495.0	186.0	1060.0	0.0	2920.0	49.0	195.0	105.0	389.0	0	0	0	0	0
t	0	0	0	872.0	433.0	346.0	312.0	214.0	78.0	167.0	22.0	9.0	444.0	1253.0	0	0	0	0	0
MA1511.1_shift4 (KLF10)
; oligos_8nt_mkv6_m43 versus MA1511.1 (KLF10); m=18/20; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.439067; ----gmCACrCCCmy----
; cor=; Ncor=
a	0	0	0	0	4746.0	6633.0	633.0	18751.0	238.0	13506.0	1.0	0.0	0.0	7545.0	934.0	0	0	0	0
c	0	0	0	0	2435.0	12654.0	19619.0	1663.0	19907.0	11.0	19995.0	19994.0	19244.0	11403.0	13118.0	0	0	0	0
g	0	0	0	0	14086.0	1299.0	98.0	1723.0	3.0	6234.0	2.0	0.0	0.0	587.0	770.0	0	0	0	0
t	0	0	0	0	1251.0	1373.0	485.0	6.0	157.0	543.0	0.0	0.0	2198.0	2686.0	6274.0	0	0	0	0
MA1516.1_shift3 (KLF3)
; oligos_8nt_mkv6_m43 versus MA1516.1 (KLF3); m=19/20; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.435937; ---grCCrCGCCCw-----
; cor=; Ncor=
a	0	0	0	7717.0	24771.0	1442.0	298.0	26757.0	2261.0	4245.0	202.0	83.0	77.0	17029.0	0	0	0	0	0
c	0	0	0	2655.0	615.0	43259.0	43259.0	707.0	43259.0	334.0	43259.0	43259.0	43259.0	10099.0	0	0	0	0	0
g	0	0	0	26568.0	18489.0	1954.0	248.0	16503.0	21.0	43259.0	31.0	29.0	48.0	1514.0	0	0	0	0	0
t	0	0	0	6319.0	207.0	705.0	335.0	419.0	1409.0	1212.0	0.0	0.0	1218.0	14617.0	0	0	0	0	0
MA1517.1_shift3 (KLF6)
; oligos_8nt_mkv6_m43 versus MA1517.1 (KLF6); m=20/20; ncol2=11; w=8; offset=-3; strand=D; shift=3; score=0.426902; ---srcCACRCCCm-----
; cor=; Ncor=
a	0	0	0	443.0	1035.0	569.0	432.0	2192.0	0.0	1024.0	0.0	25.0	71.0	955.0	0	0	0	0	0
c	0	0	0	624.0	490.0	2192.0	2192.0	284.0	2192.0	0.0	2192.0	2192.0	2192.0	665.0	0	0	0	0	0
g	0	0	0	626.0	1157.0	332.0	298.0	60.0	0.0	2192.0	0.0	60.0	12.0	52.0	0	0	0	0	0
t	0	0	0	499.0	136.0	219.0	140.0	60.0	24.0	0.0	0.0	0.0	64.0	520.0	0	0	0	0	0