One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m44/peak-motifs_oligos_8nt_mkv6_m44.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m44/peak-motifs_oligos_8nt_mkv6_m44_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m44_shift4 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv6_m44_shift4 (oligos_8nt_mkv6_m44oligos_8nt_mkv6_m44)     
; oligos_8nt_mkv6_m44 (oligos_8nt_mkv6_m44oligos_8nt_mkv6_m44); m=0 (reference); ncol1=12; shift=4; ncol=16; ----ssCGGGAGGCss
; Alignment reference
a	0	0	0	0	356	322	17	0	44	94	2674	131	83	90	294	391
c	0	0	0	0	1337	1131	3163	180	229	39	535	305	244	3038	868	848
g	0	0	0	0	1153	1449	128	3140	3003	3127	77	2824	2916	145	1851	1727
t	0	0	0	0	474	418	12	0	44	60	34	60	77	47	307	354
MA0528.2_shift4 (ZNF263) 
; oligos_8nt_mkv6_m44 versus MA0528.2 (ZNF263); m=1/5; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.709478; ----gsgGGGAGGAsg
; cor=; Ncor=
a	0	0	0	0	13287.0	11016.0	13001.0	1610.0	789.0	950.0	53900.0	830.0	695.0	52499.0	9539.0	8436.0
c	0	0	0	0	13040.0	14909.0	6183.0	1659.0	1544.0	972.0	1660.0	966.0	2190.0	1758.0	15413.0	11689.0
g	0	0	0	0	20283.0	17883.0	28912.0	51804.0	52818.0	53435.0	163.0	52875.0	52741.0	1448.0	24825.0	25115.0
t	0	0	0	0	9733.0	12535.0	8247.0	1270.0	1192.0	986.0	620.0	1672.0	717.0	638.0	6566.0	11103.0
MA1596.1_rc_shift4 (ZNF460_rc) 
; oligos_8nt_mkv6_m44 versus MA1596.1_rc (ZNF460_rc); m=2/5; ncol2=16; w=12; offset=0; strand=R; shift=4; score=0.661655; ----CyyGGGAGGCkG
; cor=; Ncor=
a	0	0	0	0	64.0	29.0	56.0	40.0	9.0	10.0	1570.0	6.0	11.0	35.0	85.0	29.0
c	0	0	0	0	1147.0	421.0	930.0	27.0	15.0	15.0	17.0	9.0	7.0	1493.0	181.0	47.0
g	0	0	0	0	158.0	175.0	110.0	1533.0	1583.0	1584.0	12.0	1596.0	1588.0	23.0	495.0	1519.0
t	0	0	0	0	243.0	987.0	516.0	12.0	5.0	3.0	13.0	1.0	6.0	61.0	851.0	17.0
MA1653.1_rc_shift5 (ZNF148_rc) 
; oligos_8nt_mkv6_m44 versus MA1653.1_rc (ZNF148_rc); m=3/5; ncol2=12; w=11; offset=1; strand=R; shift=5; score=0.601942; -----ggGGGAGGGGs
; cor=; Ncor=
a	0	0	0	0	0	1180.0	1190.0	1082.0	465.0	67.0	10040.0	66.0	136.0	200.0	113.0	2664.0
c	0	0	0	0	0	2064.0	1924.0	392.0	460.0	112.0	1012.0	211.0	401.0	471.0	205.0	3215.0
g	0	0	0	0	0	7114.0	7239.0	9283.0	9922.0	10954.0	14.0	10833.0	10526.0	10396.0	10799.0	4057.0
t	0	0	0	0	0	841.0	846.0	442.0	352.0	66.0	133.0	89.0	136.0	132.0	82.0	1263.0
MA1122.1_shift3 (TFDP1) 
; oligos_8nt_mkv6_m44 versus MA1122.1 (TFDP1); m=4/5; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.551478; ---gsGCGGGAAss--
; cor=; Ncor=
a	0	0	0	411.0	263.0	48.0	28.0	14.0	36.0	27.0	1855.0	1645.0	465.0	381.0	0	0
c	0	0	0	491.0	684.0	71.0	1886.0	54.0	80.0	32.0	24.0	170.0	647.0	604.0	0	0
g	0	0	0	777.0	940.0	1862.0	22.0	1932.0	1865.0	1919.0	98.0	137.0	648.0	648.0	0	0
t	0	0	0	328.0	120.0	26.0	71.0	7.0	26.0	29.0	30.0	55.0	247.0	374.0	0	0
MA0751.1_rc_shift0 (ZIC4_rc) 
; oligos_8nt_mkv6_m44 versus MA0751.1_rc (ZIC4_rc); m=5/5; ncol2=15; w=11; offset=-4; strand=R; shift=0; score=0.481471; dCrCmrCrGGGGGym-
; cor=; Ncor=
a	916.0	1156.0	1454.0	67.0	3488.0	1017.0	69.0	1078.0	11.0	1.0	275.0	147.0	98.0	21.0	1887.0	0
c	363.0	4522.0	599.0	5086.0	1903.0	252.0	4795.0	6.0	0.0	0.0	225.0	121.0	52.0	1553.0	4126.0	0
g	1224.0	452.0	1044.0	18.0	865.0	2279.0	68.0	2222.0	2985.0	2999.0	2757.0	2890.0	2870.0	812.0	934.0	0
t	1083.0	74.0	704.0	258.0	1052.0	24.0	1095.0	24.0	114.0	8.0	614.0	209.0	315.0	3013.0	578.0	0