One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m46/peak-motifs_oligos_8nt_mkv6_m46.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m46/peak-motifs_oligos_8nt_mkv6_m46_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m46_shift5 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m46_shift5 (oligos_8nt_mkv6_m46oligos_8nt_mkv6_m46)
; oligos_8nt_mkv6_m46 (oligos_8nt_mkv6_m46oligos_8nt_mkv6_m46); m=0 (reference); ncol1=12; shift=5; ncol=17; -----ssAGCCCCCAss ; Alignment reference a 0 0 0 0 0 162 132 761 21 6 2 6 0 1 796 106 177 c 0 0 0 0 0 309 333 63 9 809 800 774 792 763 4 353 282 g 0 0 0 0 0 210 227 4 763 2 24 45 33 54 28 242 274 t 0 0 0 0 0 147 136 0 35 11 2 3 3 10 0 127 95

MA1630.1_rc_shift6 (Znf281_rc)
; oligos_8nt_mkv6_m46 versus MA1630.1_rc (Znf281_rc); m=1/8; ncol2=11; w=11; offset=1; strand=R; shift=6; score=0.666562; ------CcTCCCCCAcc ; cor=; Ncor= a 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 c 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 g 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 t 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0

MA0737.1_shift6 (GLIS3)
; oligos_8nt_mkv6_m46 versus MA0737.1 (GLIS3); m=2/8; ncol2=14; w=11; offset=1; strand=D; shift=6; score=0.570518; ------KACCCCCCACg ; cor=; Ncor= a 0 0 0 0 0 0 8.0 422.0 0.0 0.0 2.0 0.0 4.0 0.0 886.0 1.0 226.0 c 0 0 0 0 0 0 41.0 2.0 289.0 280.0 309.0 288.0 200.0 211.0 1.0 204.0 17.0 g 0 0 0 0 0 0 674.0 13.0 1.0 0.0 0.0 0.0 0.0 0.0 67.0 8.0 648.0 t 0 0 0 0 0 0 258.0 0.0 1.0 0.0 9.0 1.0 0.0 20.0 9.0 17.0 78.0

MA0735.1_shift5 (GLIS1)
; oligos_8nt_mkv6_m46 versus MA0735.1 (GLIS1); m=3/8; ncol2=16; w=12; offset=0; strand=D; shift=5; score=0.557134; -----mGACCCCCCACG ; cor=; Ncor= a 0 0 0 0 0 3236.0 3.0 6314.0 0.0 4.0 0.0 3.0 0.0 6.0 6781.0 0.0 7.0 c 0 0 0 0 0 1842.0 44.0 0.0 4807.0 4769.0 4796.0 4817.0 4702.0 4505.0 3.0 4549.0 0.0 g 0 0 0 0 0 100.0 8617.0 6.0 2.0 2.0 11.0 5.0 0.0 5.0 160.0 0.0 10081.0 t 0 0 0 0 0 891.0 1016.0 8.0 0.0 3.0 0.0 2.0 7.0 2.0 6.0 0.0 51.0

MA1578.1_shift8 (VEZF1)
; oligos_8nt_mkv6_m46 versus MA1578.1 (VEZF1); m=4/8; ncol2=10; w=9; offset=3; strand=D; shift=8; score=0.544988; --------CCCCCCmyt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0

MA0155.1_rc_shift7 (INSM1_rc)
; oligos_8nt_mkv6_m46 versus MA0155.1_rc (INSM1_rc); m=5/8; ncol2=12; w=10; offset=2; strand=R; shift=7; score=0.519121; -------ygmCCCCwkr ; cor=; Ncor= a 0 0 0 0 0 0 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 c 0 0 0 0 0 0 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 g 0 0 0 0 0 0 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 t 0 0 0 0 0 0 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0

MA1599.1_shift0 (ZNF682)
; oligos_8nt_mkv6_m46 versus MA1599.1 (ZNF682); m=6/8; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.483897; crGGCyAAGCCCCwrt- ; cor=; Ncor= a 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 0 c 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 0 g 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 0 t 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0 0

MA0741.1_shift3 (KLF16)
; oligos_8nt_mkv6_m46 versus MA0741.1 (KLF16); m=7/8; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.454052; ---gmCMCgCCCMC--- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0

MA0039.4_shift8 (KLF4)
; oligos_8nt_mkv6_m46 versus MA0039.4 (KLF4); m=8/8; ncol2=12; w=9; offset=3; strand=D; shift=8; score=0.44311; --------ssCCCCACC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 c 0 0 0 0 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 g 0 0 0 0 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 t 0 0 0 0 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m46_shift5 (oligos_8nt_mkv6_m46oligos_8nt_mkv6_m46)				; oligos_8nt_mkv6_m46 (oligos_8nt_mkv6_m46oligos_8nt_mkv6_m46); m=0 (reference); ncol1=12; shift=5; ncol=17; -----ssAGCCCCCAss ; Alignment reference a 0 0 0 0 0 162 132 761 21 6 2 6 0 1 796 106 177 c 0 0 0 0 0 309 333 63 9 809 800 774 792 763 4 353 282 g 0 0 0 0 0 210 227 4 763 2 24 45 33 54 28 242 274 t 0 0 0 0 0 147 136 0 35 11 2 3 3 10 0 127 95
MA1630.1_rc_shift6 (Znf281_rc)				; oligos_8nt_mkv6_m46 versus MA1630.1_rc (Znf281_rc); m=1/8; ncol2=11; w=11; offset=1; strand=R; shift=6; score=0.666562; ------CcTCCCCCAcc ; cor=; Ncor= a 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 c 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 g 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 t 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0
MA0737.1_shift6 (GLIS3)				; oligos_8nt_mkv6_m46 versus MA0737.1 (GLIS3); m=2/8; ncol2=14; w=11; offset=1; strand=D; shift=6; score=0.570518; ------KACCCCCCACg ; cor=; Ncor= a 0 0 0 0 0 0 8.0 422.0 0.0 0.0 2.0 0.0 4.0 0.0 886.0 1.0 226.0 c 0 0 0 0 0 0 41.0 2.0 289.0 280.0 309.0 288.0 200.0 211.0 1.0 204.0 17.0 g 0 0 0 0 0 0 674.0 13.0 1.0 0.0 0.0 0.0 0.0 0.0 67.0 8.0 648.0 t 0 0 0 0 0 0 258.0 0.0 1.0 0.0 9.0 1.0 0.0 20.0 9.0 17.0 78.0
MA0735.1_shift5 (GLIS1)				; oligos_8nt_mkv6_m46 versus MA0735.1 (GLIS1); m=3/8; ncol2=16; w=12; offset=0; strand=D; shift=5; score=0.557134; -----mGACCCCCCACG ; cor=; Ncor= a 0 0 0 0 0 3236.0 3.0 6314.0 0.0 4.0 0.0 3.0 0.0 6.0 6781.0 0.0 7.0 c 0 0 0 0 0 1842.0 44.0 0.0 4807.0 4769.0 4796.0 4817.0 4702.0 4505.0 3.0 4549.0 0.0 g 0 0 0 0 0 100.0 8617.0 6.0 2.0 2.0 11.0 5.0 0.0 5.0 160.0 0.0 10081.0 t 0 0 0 0 0 891.0 1016.0 8.0 0.0 3.0 0.0 2.0 7.0 2.0 6.0 0.0 51.0
MA1578.1_shift8 (VEZF1)				; oligos_8nt_mkv6_m46 versus MA1578.1 (VEZF1); m=4/8; ncol2=10; w=9; offset=3; strand=D; shift=8; score=0.544988; --------CCCCCCmyt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 c 0 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 g 0 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 t 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0
MA0155.1_rc_shift7 (INSM1_rc)				; oligos_8nt_mkv6_m46 versus MA0155.1_rc (INSM1_rc); m=5/8; ncol2=12; w=10; offset=2; strand=R; shift=7; score=0.519121; -------ygmCCCCwkr ; cor=; Ncor= a 0 0 0 0 0 0 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 c 0 0 0 0 0 0 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 g 0 0 0 0 0 0 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 t 0 0 0 0 0 0 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0
MA1599.1_shift0 (ZNF682)				; oligos_8nt_mkv6_m46 versus MA1599.1 (ZNF682); m=6/8; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.483897; crGGCyAAGCCCCwrt- ; cor=; Ncor= a 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 0 c 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 0 g 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 0 t 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0 0
MA0741.1_shift3 (KLF16)				; oligos_8nt_mkv6_m46 versus MA0741.1 (KLF16); m=7/8; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.454052; ---gmCMCgCCCMC--- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0 0 0
MA0039.4_shift8 (KLF4)				; oligos_8nt_mkv6_m46 versus MA0039.4 (KLF4); m=8/8; ncol2=12; w=9; offset=3; strand=D; shift=8; score=0.44311; --------ssCCCCACC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 c 0 0 0 0 0 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 g 0 0 0 0 0 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 t 0 0 0 0 0 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0