One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m47/peak-motifs_oligos_8nt_mkv6_m47.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m47/peak-motifs_oligos_8nt_mkv6_m47_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m47_shift3 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m47_shift3 (oligos_8nt_mkv6_m47oligos_8nt_mkv6_m47)
; oligos_8nt_mkv6_m47 (oligos_8nt_mkv6_m47oligos_8nt_mkv6_m47); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCCCACCTCss ; Alignment reference a 0 0 0 201 267 11 2 12 1460 8 23 12 21 217 237 c 0 0 0 721 631 1656 1633 1591 22 1694 1557 24 1689 730 602 g 0 0 0 445 500 48 78 78 234 4 120 146 7 512 599 t 0 0 0 356 325 8 10 42 7 17 23 1541 6 264 285

MA0039.4_shift2 (KLF4)
; oligos_8nt_mkv6_m47 versus MA0039.4 (KLF4); m=1/8; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.615688; --ssCCCCACCChs- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0

MA1652.1_rc_shift3 (ZKSCAN5_rc)
; oligos_8nt_mkv6_m47 versus MA1652.1_rc (ZKSCAN5_rc); m=2/8; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.615289; ---yycTCACyTCCt ; cor=; Ncor= a 0 0 0 537.0 477.0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 701.0 c 0 0 0 1052.0 1078.0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 801.0 g 0 0 0 569.0 504.0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 315.0 t 0 0 0 1169.0 1268.0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 1510.0

MA1601.1_rc_shift2 (ZNF75D_rc)
; oligos_8nt_mkv6_m47 versus MA1601.1_rc (ZNF75D_rc); m=3/8; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.511129; --TyTCCCACay--- ; cor=; Ncor= a 0 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 0 0 c 0 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 0 0 g 0 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 0 0 t 0 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0 0 0

MA0803.1_rc_shift4 (TBX15_rc)
; oligos_8nt_mkv6_m47 versus MA0803.1_rc (TBX15_rc); m=4/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.489181; ----TCACACCT--- ; cor=; Ncor= a 0 0 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 c 0 0 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 g 0 0 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 t 0 0 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0

MA0807.1_rc_shift4 (TBX5_rc)
; oligos_8nt_mkv6_m47 versus MA0807.1_rc (TBX5_rc); m=5/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.485607; ----TmACACCT--- ; cor=; Ncor= a 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 c 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 g 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 t 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0

MA0805.1_rc_shift4 (TBX1_rc)
; oligos_8nt_mkv6_m47 versus MA0805.1_rc (TBX1_rc); m=6/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.472268; ----TCACACCT--- ; cor=; Ncor= a 0 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 c 0 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 g 0 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 t 0 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0

MA0806.1_rc_shift4 (TBX4_rc)
; oligos_8nt_mkv6_m47 versus MA0806.1_rc (TBX4_rc); m=7/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.46742; ----TcACACCT--- ; cor=; Ncor= a 0 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 c 0 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 g 0 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 t 0 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0

MA1630.1_rc_shift0 (Znf281_rc)
; oligos_8nt_mkv6_m47 versus MA1630.1_rc (Znf281_rc); m=8/8; ncol2=11; w=8; offset=-3; strand=R; shift=0; score=0.44536; CcTCCCCCAcc---- ; cor=; Ncor= a 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 c 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 g 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 t 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m47_shift3 (oligos_8nt_mkv6_m47oligos_8nt_mkv6_m47)				; oligos_8nt_mkv6_m47 (oligos_8nt_mkv6_m47oligos_8nt_mkv6_m47); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCCCACCTCss ; Alignment reference a 0 0 0 201 267 11 2 12 1460 8 23 12 21 217 237 c 0 0 0 721 631 1656 1633 1591 22 1694 1557 24 1689 730 602 g 0 0 0 445 500 48 78 78 234 4 120 146 7 512 599 t 0 0 0 356 325 8 10 42 7 17 23 1541 6 264 285
MA0039.4_shift2 (KLF4)				; oligos_8nt_mkv6_m47 versus MA0039.4 (KLF4); m=1/8; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.615688; --ssCCCCACCChs- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0
MA1652.1_rc_shift3 (ZKSCAN5_rc)				; oligos_8nt_mkv6_m47 versus MA1652.1_rc (ZKSCAN5_rc); m=2/8; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.615289; ---yycTCACyTCCt ; cor=; Ncor= a 0 0 0 537.0 477.0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 701.0 c 0 0 0 1052.0 1078.0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 801.0 g 0 0 0 569.0 504.0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 315.0 t 0 0 0 1169.0 1268.0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 1510.0
MA1601.1_rc_shift2 (ZNF75D_rc)				; oligos_8nt_mkv6_m47 versus MA1601.1_rc (ZNF75D_rc); m=3/8; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=0.511129; --TyTCCCACay--- ; cor=; Ncor= a 0 0 512.0 396.0 18.0 28.0 124.0 5.0 6686.0 0.0 3519.0 1225.0 0 0 0 c 0 0 746.0 1693.0 15.0 6678.0 6545.0 6710.0 4.0 6757.0 1468.0 1850.0 0 0 0 g 0 0 256.0 576.0 20.0 29.0 44.0 18.0 59.0 0.0 715.0 1573.0 0 0 0 t 0 0 5245.0 4094.0 6706.0 24.0 46.0 26.0 10.0 2.0 1057.0 2111.0 0 0 0
MA0803.1_rc_shift4 (TBX15_rc)				; oligos_8nt_mkv6_m47 versus MA0803.1_rc (TBX15_rc); m=4/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.489181; ----TCACACCT--- ; cor=; Ncor= a 0 0 0 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 0 0 c 0 0 0 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 0 0 g 0 0 0 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 0 0 t 0 0 0 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0 0 0
MA0807.1_rc_shift4 (TBX5_rc)				; oligos_8nt_mkv6_m47 versus MA0807.1_rc (TBX5_rc); m=5/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.485607; ----TmACACCT--- ; cor=; Ncor= a 0 0 0 0 283.0 915.0 1804.0 0.0 1804.0 28.0 133.0 207.0 0 0 0 c 0 0 0 0 343.0 1804.0 201.0 1804.0 166.0 1804.0 1804.0 409.0 0 0 0 g 0 0 0 0 76.0 616.0 225.0 0.0 131.0 0.0 190.0 89.0 0 0 0 t 0 0 0 0 1804.0 126.0 162.0 27.0 45.0 0.0 235.0 1804.0 0 0 0
MA0805.1_rc_shift4 (TBX1_rc)				; oligos_8nt_mkv6_m47 versus MA0805.1_rc (TBX1_rc); m=6/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.472268; ----TCACACCT--- ; cor=; Ncor= a 0 0 0 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 0 0 c 0 0 0 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 0 0 g 0 0 0 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 0 0 t 0 0 0 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0 0 0
MA0806.1_rc_shift4 (TBX4_rc)				; oligos_8nt_mkv6_m47 versus MA0806.1_rc (TBX4_rc); m=7/8; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.46742; ----TcACACCT--- ; cor=; Ncor= a 0 0 0 0 965.0 8384.0 18646.0 0.0 18646.0 33.0 1162.0 1283.0 0 0 0 c 0 0 0 0 1733.0 18646.0 304.0 18646.0 191.0 18646.0 18646.0 2353.0 0 0 0 g 0 0 0 0 588.0 5396.0 2859.0 0.0 1644.0 189.0 2328.0 437.0 0 0 0 t 0 0 0 0 18646.0 1355.0 1551.0 0.0 0.0 38.0 3082.0 18646.0 0 0 0
MA1630.1_rc_shift0 (Znf281_rc)				; oligos_8nt_mkv6_m47 versus MA1630.1_rc (Znf281_rc); m=8/8; ncol2=11; w=8; offset=-3; strand=R; shift=0; score=0.44536; CcTCCCCCAcc---- ; cor=; Ncor= a 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 745.0 954.0 0 0 0 0 c 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 3751.0 3539.0 0 0 0 0 g 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 1076.0 878.0 0 0 0 0 t 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0 996.0 1197.0 0 0 0 0