Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m5/peak-motifs_oligos_8nt_mkv6_m5.tf
		file1	1	12	3102
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv6_m5 MA0750.2 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ZBTB7A 0.858 0.792 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv6_m5 MA0076.2 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ELK4 0.851 0.780 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_8nt_mkv6_m5 MA0765.2 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ETV5 0.806 0.739 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_8nt_mkv6_m5 MA0645.1 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ETV6 0.793 0.661 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0759.1 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ELK3 0.747 0.622 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0028.2 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ELK1 0.743 0.619 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0098.3 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ETS1 0.738 0.615 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0156.2 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 FEV 0.734 0.612 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0763.1 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ETV3 0.732 0.610 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0474.2 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ERG 0.732 0.610 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0475.2 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 FLI1 0.730 0.608 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0760.1 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ERF 0.725 0.604 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv6_m5 MA0136.2 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ELF5 0.769 0.591 12 11 10 13 0.7692 0.8333 0.9091 R 2
oligos_8nt_mkv6_m5 MA1484.1 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ETS2 0.832 0.576 12 10 9 13 0.6923 0.7500 0.9000 R 3
oligos_8nt_mkv6_m5 MA1483.1 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ELF2 0.757 0.541 12 12 10 14 0.7143 0.8333 0.8333 R 2
oligos_8nt_mkv6_m5 MA0641.1 oligos_8nt_mkv6_m5oligos_8nt_mkv6_m5 ELF4 0.755 0.539 12 12 10 14 0.7143 0.8333 0.8333 R 2 
 Host name	pedagogix
 Job started	2020-04-14.163033
 Job done	2020-04-14.163053
 Seconds	3.31
	user	3.31
	system	0.32
	cuser	15.45
;	csystem	0.98