One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m50/peak-motifs_oligos_8nt_mkv6_m50.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m50/peak-motifs_oligos_8nt_mkv6_m50_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m50_shift3 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m50_shift3 (oligos_8nt_mkv6_m50oligos_8nt_mkv6_m50)
; oligos_8nt_mkv6_m50 (oligos_8nt_mkv6_m50oligos_8nt_mkv6_m50); m=0 (reference); ncol1=12; shift=3; ncol=17; ---ssCCCAGCCCss-- ; Alignment reference a 0 0 0 504 428 13 0 7 2340 8 11 0 0 512 421 0 0 c 0 0 0 1042 774 2848 2804 2681 353 24 2850 2809 2843 938 721 0 0 g 0 0 0 741 1107 0 68 173 179 2807 0 63 29 866 1283 0 0 t 0 0 0 585 563 11 0 11 0 33 11 0 0 556 447 0 0

MA1513.1_shift4 (KLF15)
; oligos_8nt_mkv6_m50 versus MA1513.1 (KLF15); m=1/8; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.762955; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0039.4_shift3 (KLF4)
; oligos_8nt_mkv6_m50 versus MA0039.4 (KLF4); m=2/8; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.709734; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0

MA1515.1_shift3 (KLF2)
; oligos_8nt_mkv6_m50 versus MA1515.1 (KLF2); m=3/8; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.652678; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0

MA1516.1_shift3 (KLF3)
; oligos_8nt_mkv6_m50 versus MA1516.1 (KLF3); m=4/8; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.645359; ---grCCrCGCCCw--- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0

MA0599.1_shift4 (KLF5)
; oligos_8nt_mkv6_m50 versus MA0599.1 (KLF5); m=5/8; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.64223; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA1599.1_shift1 (ZNF682)
; oligos_8nt_mkv6_m50 versus MA1599.1 (ZNF682); m=6/8; ncol2=16; w=12; offset=-2; strand=D; shift=1; score=0.539411; -crGGCyAAGCCCCwrt ; cor=; Ncor= a 0 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 c 0 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 g 0 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 t 0 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0

MA0516.2_shift0 (SP2)
; oligos_8nt_mkv6_m50 versus MA0516.2 (SP2); m=7/8; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.508326; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

MA0597.1_shift7 (THAP1)
; oligos_8nt_mkv6_m50 versus MA0597.1 (THAP1); m=8/8; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.460647; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m50_shift3 (oligos_8nt_mkv6_m50oligos_8nt_mkv6_m50)				; oligos_8nt_mkv6_m50 (oligos_8nt_mkv6_m50oligos_8nt_mkv6_m50); m=0 (reference); ncol1=12; shift=3; ncol=17; ---ssCCCAGCCCss-- ; Alignment reference a 0 0 0 504 428 13 0 7 2340 8 11 0 0 512 421 0 0 c 0 0 0 1042 774 2848 2804 2681 353 24 2850 2809 2843 938 721 0 0 g 0 0 0 741 1107 0 68 173 179 2807 0 63 29 866 1283 0 0 t 0 0 0 585 563 11 0 11 0 33 11 0 0 556 447 0 0
MA1513.1_shift4 (KLF15)				; oligos_8nt_mkv6_m50 versus MA1513.1 (KLF15); m=1/8; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.762955; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0
MA0039.4_shift3 (KLF4)				; oligos_8nt_mkv6_m50 versus MA0039.4 (KLF4); m=2/8; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.709734; ---ssCCCCACCChs-- ; cor=; Ncor= a 0 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 c 0 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 g 0 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 t 0 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0
MA1515.1_shift3 (KLF2)				; oligos_8nt_mkv6_m50 versus MA1515.1 (KLF2); m=3/8; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.652678; ---srCCmCrCCCw--- ; cor=; Ncor= a 0 0 0 1054.0 2510.0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 1838.0 0 0 0 c 0 0 0 1376.0 1103.0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 1142.0 0 0 0 g 0 0 0 1320.0 2112.0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 389.0 0 0 0 t 0 0 0 872.0 433.0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 1253.0 0 0 0
MA1516.1_shift3 (KLF3)				; oligos_8nt_mkv6_m50 versus MA1516.1 (KLF3); m=4/8; ncol2=11; w=11; offset=0; strand=D; shift=3; score=0.645359; ---grCCrCGCCCw--- ; cor=; Ncor= a 0 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 17029.0 0 0 0 c 0 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 10099.0 0 0 0 g 0 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 1514.0 0 0 0 t 0 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 14617.0 0 0 0
MA0599.1_shift4 (KLF5)				; oligos_8nt_mkv6_m50 versus MA0599.1 (KLF5); m=5/8; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.64223; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0
MA1599.1_shift1 (ZNF682)				; oligos_8nt_mkv6_m50 versus MA1599.1 (ZNF682); m=6/8; ncol2=16; w=12; offset=-2; strand=D; shift=1; score=0.539411; -crGGCyAAGCCCCwrt ; cor=; Ncor= a 0 205.0 304.0 110.0 103.0 100.0 48.0 953.0 999.0 6.0 13.0 5.0 7.0 66.0 367.0 324.0 192.0 c 0 423.0 234.0 85.0 42.0 795.0 597.0 72.0 31.0 7.0 999.0 1033.0 1034.0 896.0 117.0 254.0 260.0 g 0 214.0 349.0 774.0 877.0 105.0 55.0 20.0 22.0 1038.0 13.0 9.0 10.0 32.0 118.0 300.0 194.0 t 0 216.0 171.0 89.0 36.0 58.0 358.0 13.0 6.0 7.0 33.0 11.0 7.0 64.0 456.0 180.0 412.0
MA0516.2_shift0 (SP2)				; oligos_8nt_mkv6_m50 versus MA0516.2 (SP2); m=7/8; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.508326; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0
MA0597.1_shift7 (THAP1)				; oligos_8nt_mkv6_m50 versus MA0597.1 (THAP1); m=8/8; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.460647; -------ytGCCMkya- ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 116.0 0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 34.0 0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 17.0 0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0 32.0 0