One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m7/peak-motifs_oligos_8nt_mkv6_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m7/peak-motifs_oligos_8nt_mkv6_m7_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m7_shift4 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv6_m7_shift4 (oligos_8nt_mkv6_m7oligos_8nt_mkv6_m7)     
; oligos_8nt_mkv6_m7 (oligos_8nt_mkv6_m7oligos_8nt_mkv6_m7); m=0 (reference); ncol1=12; shift=4; ncol=16; ----ssCGCCrCCGcs
; Alignment reference
a	0	0	0	0	571	509	28	26	108	71	2278	50	6	30	521	510
c	0	0	0	0	1538	2087	4164	68	3955	4079	377	4151	4199	118	2354	1952
g	0	0	0	0	1782	1295	205	4274	177	162	1570	101	193	4220	993	1426
t	0	0	0	0	518	518	12	41	169	97	184	107	11	41	541	521
MA0162.4_shift3 (EGR1) 
; oligos_8nt_mkv6_m7 versus MA0162.4 (EGR1); m=1/5; ncol2=14; w=12; offset=-1; strand=D; shift=3; score=0.606597; ---ccmCGCCCACgCm
; cor=; Ncor=
a	0	0	0	7087.0	3997.0	14508.0	642.0	5110.0	227.0	1440.0	314.0	22297.0	153.0	4696.0	969.0	8903.0
c	0	0	0	11610.0	14749.0	10303.0	28403.0	1131.0	29338.0	27321.0	28958.0	5420.0	29507.0	2806.0	25196.0	10441.0
g	0	0	0	6621.0	7211.0	3854.0	756.0	22237.0	665.0	1455.0	698.0	2122.0	699.0	20544.0	2157.0	6345.0
t	0	0	0	5280.0	4641.0	1933.0	797.0	2120.0	368.0	382.0	628.0	759.0	239.0	2552.0	2276.0	4909.0
MA0732.1_shift3 (EGR3) 
; oligos_8nt_mkv6_m7 versus MA0732.1 (EGR3); m=2/5; ncol2=15; w=12; offset=-1; strand=D; shift=3; score=0.562101; ---yhmCGCCCMCGCA
; cor=; Ncor=
a	0	0	0	337.0	444.0	1031.0	2.0	66.0	0.0	0.0	0.0	1159.0	0.0	39.0	2.0	1262.0
c	0	0	0	645.0	485.0	701.0	1855.0	32.0	1856.0	1858.0	1823.0	455.0	1875.0	28.0	1899.0	54.0
g	0	0	0	278.0	191.0	10.0	0.0	2158.0	2.0	0.0	7.0	11.0	7.0	2152.0	1.0	168.0
t	0	0	0	470.0	540.0	20.0	13.0	36.0	0.0	10.0	80.0	4.0	2.0	26.0	21.0	80.0
MA0741.1_shift2 (KLF16) 
; oligos_8nt_mkv6_m7 versus MA0741.1 (KLF16); m=3/5; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.459783; --gmCMCgCCCMC---
; cor=; Ncor=
a	0	0	666.0	901.0	62.0	1150.0	66.0	497.0	8.0	2.0	16.0	437.0	32.0	0	0	0
c	0	0	535.0	1612.0	1612.0	461.0	1612.0	173.0	1612.0	1612.0	1612.0	1175.0	1612.0	0	0	0
g	0	0	1612.0	77.0	6.0	32.0	17.0	1612.0	0.0	8.0	3.0	19.0	23.0	0	0	0
t	0	0	240.0	116.0	45.0	0.0	19.0	403.0	0.0	0.0	97.0	40.0	370.0	0	0	0
MA1513.1_shift2 (KLF15) 
; oligos_8nt_mkv6_m7 versus MA1513.1 (KLF15); m=4/5; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.459204; --scCCCGCCCcs---
; cor=; Ncor=
a	0	0	1184.0	937.0	40.0	93.0	0.0	0.0	11.0	55.0	12.0	1566.0	1067.0	0	0	0
c	0	0	2903.0	6506.0	11234.0	10940.0	11368.0	0.0	11345.0	10954.0	11254.0	6267.0	5013.0	0	0	0
g	0	0	5538.0	2117.0	86.0	333.0	1.0	11369.0	2.0	359.0	100.0	1934.0	3124.0	0	0	0
t	0	0	1744.0	1809.0	9.0	3.0	0.0	0.0	11.0	1.0	3.0	1602.0	2165.0	0	0	0
MA0471.2_rc_shift0 (E2F6_rc) 
; oligos_8nt_mkv6_m7 versus MA0471.2_rc (E2F6_rc); m=5/5; ncol2=13; w=9; offset=-4; strand=R; shift=0; score=0.409384; syTTCCCGCCyyc---
; cor=; Ncor=
a	5600.0	4163.0	757.0	268.0	296.0	353.0	813.0	2125.0	205.0	453.0	6897.0	5665.0	5369.0	0	0	0
c	11405.0	12530.0	5021.0	2322.0	31614.0	31973.0	30573.0	693.0	31790.0	29387.0	11562.0	11649.0	12358.0	0	0	0
g	8477.0	7410.0	1595.0	1171.0	834.0	434.0	539.0	26424.0	837.0	1148.0	5102.0	7405.0	8075.0	0	0	0
t	7616.0	8995.0	25725.0	29337.0	354.0	338.0	1173.0	3856.0	266.0	2110.0	9537.0	8379.0	7296.0	0	0	0