One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m9/peak-motifs_oligos_8nt_mkv6_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/oligos_8nt_mkv6_m9/peak-motifs_oligos_8nt_mkv6_m9_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv6_m9_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv6_m9_shift0 (oligos_8nt_mkv6_m9oligos_8nt_mkv6_m9)
; oligos_8nt_mkv6_m9 (oligos_8nt_mkv6_m9oligos_8nt_mkv6_m9); m=0 (reference); ncol1=12; shift=0; ncol=12; ssGACCTGCAss ; Alignment reference a 159 153 8 835 11 9 0 62 14 751 117 154 c 327 273 1 7 818 781 56 43 773 19 312 279 g 264 267 825 2 8 49 47 729 30 70 294 266 t 98 155 14 4 11 9 745 14 31 8 125 149

MA0522.3_shift0 (TCF3)
; oligos_8nt_mkv6_m9 versus MA0522.3 (TCF3); m=1/4; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.676764; svCACCTGCss- ; cor=; Ncor= a 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0

MA1648.1_shift0 (TCF12(var.2))
; oligos_8nt_mkv6_m9 versus MA1648.1 (TCF12(var.2)); m=2/4; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.668767; ssCACCTGCys- ; cor=; Ncor= a 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0

MA0103.3_shift0 (ZEB1)
; oligos_8nt_mkv6_m9 versus MA0103.3 (ZEB1); m=3/4; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.643461; ssCACCTGsss- ; cor=; Ncor= a 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 c 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 g 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 t 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0

MA1536.1_rc_shift0 (NR2C2(var.2)_rc)
; oligos_8nt_mkv6_m9 versus MA1536.1_rc (NR2C2(var.2)_rc); m=4/4; ncol2=8; w=8; offset=0; strand=R; shift=0; score=0.508065; dYGACCyy---- ; cor=; Ncor= a 5122.0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 2861.0 0 0 0 0 c 3684.0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 6420.0 0 0 0 0 g 4757.0 0.0 18628.0 0.0 0.0 236.0 719.0 3111.0 0 0 0 0 t 5065.0 18628.0 0.0 0.0 0.0 0.0 10232.0 6236.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv6_m9_shift0 (oligos_8nt_mkv6_m9oligos_8nt_mkv6_m9)				; oligos_8nt_mkv6_m9 (oligos_8nt_mkv6_m9oligos_8nt_mkv6_m9); m=0 (reference); ncol1=12; shift=0; ncol=12; ssGACCTGCAss ; Alignment reference a 159 153 8 835 11 9 0 62 14 751 117 154 c 327 273 1 7 818 781 56 43 773 19 312 279 g 264 267 825 2 8 49 47 729 30 70 294 266 t 98 155 14 4 11 9 745 14 31 8 125 149
MA0522.3_shift0 (TCF3)				; oligos_8nt_mkv6_m9 versus MA0522.3 (TCF3); m=1/4; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.676764; svCACCTGCss- ; cor=; Ncor= a 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0
MA1648.1_shift0 (TCF12(var.2))				; oligos_8nt_mkv6_m9 versus MA1648.1 (TCF12(var.2)); m=2/4; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.668767; ssCACCTGCys- ; cor=; Ncor= a 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0
MA0103.3_shift0 (ZEB1)				; oligos_8nt_mkv6_m9 versus MA0103.3 (ZEB1); m=3/4; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.643461; ssCACCTGsss- ; cor=; Ncor= a 3211.0 4685.0 114.0 19905.0 32.0 193.0 4.0 441.0 1982.0 4258.0 3490.0 0 c 7998.0 5550.0 19195.0 0.0 19878.0 19257.0 501.0 178.0 9561.0 6117.0 6955.0 0 g 5228.0 5179.0 158.0 223.0 97.0 649.0 355.0 19381.0 5178.0 6601.0 5828.0 0 t 3692.0 4715.0 662.0 1.0 122.0 30.0 19269.0 129.0 3408.0 3153.0 3856.0 0
MA1536.1_rc_shift0 (NR2C2(var.2)_rc)				; oligos_8nt_mkv6_m9 versus MA1536.1_rc (NR2C2(var.2)_rc); m=4/4; ncol2=8; w=8; offset=0; strand=R; shift=0; score=0.508065; dYGACCyy---- ; cor=; Ncor= a 5122.0 0.0 4406.0 18628.0 4790.0 1341.0 0.0 2861.0 0 0 0 0 c 3684.0 6639.0 1643.0 1588.0 18628.0 18628.0 8395.0 6420.0 0 0 0 0 g 4757.0 0.0 18628.0 0.0 0.0 236.0 719.0 3111.0 0 0 0 0 t 5065.0 18628.0 0.0 0.0 0.0 0.0 10232.0 6236.0 0 0 0 0