One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m10/peak-motifs_positions_6nt_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m10/peak-motifs_positions_6nt_m10_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m10_shift0 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m10_shift0 (positions_6nt_m10positions_6nt_m10)
; positions_6nt_m10 (positions_6nt_m10positions_6nt_m10); m=0 (reference); ncol1=18; shift=0; ncol=19; sbsCCAGCTGGCAGCTgs- ; Alignment reference a 80 88 64 12 10 393 6 12 12 5 19 5 396 12 9 9 43 64 0 c 125 109 187 342 398 9 14 389 11 11 50 404 12 19 402 18 101 131 0 g 132 113 130 55 10 17 392 15 11 402 326 11 5 382 8 7 234 128 0 t 88 115 44 16 7 6 13 9 391 7 30 5 12 12 6 391 47 102 0

MA0500.2_rc_shift1 (MYOG_rc)
; positions_6nt_m10 versus MA0500.2_rc (MYOG_rc); m=1/10; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.488505; -sarCAGCTGyts------ ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; positions_6nt_m10 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/10; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.48379; -rmaCAGCTGtky------ ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; positions_6nt_m10 versus MA0521.1_rc (Tcf12_rc); m=3/10; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.483619; -cwsCAGCTGYy------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0

MA1641.1_shift1 (MYF5)
; positions_6nt_m10 versus MA1641.1 (MYF5); m=4/10; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.47768; -gvaCAGCTGtbc------ ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; positions_6nt_m10 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=5/10; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.470977; --csCAGCTGsg------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; positions_6nt_m10 versus MA1472.1 (BHLHA15(var.2)); m=6/10; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.443093; --avCAGCTGyy------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0

MA1628.1_rc_shift1 (Zic1::Zic2_rc)
; positions_6nt_m10 versus MA1628.1_rc (Zic1::Zic2_rc); m=7/10; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.431874; -ysCCTGCTGbg------- ; cor=; Ncor= a 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 0 0 0 0 0 c 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 0 0 0 0 0 g 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 0 0 0 0 0 t 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0 0 0 0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; positions_6nt_m10 versus MA1100.2_rc (ASCL1_rc); m=8/10; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.426884; --rgCAGCTGyy------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; positions_6nt_m10 versus MA1467.1 (ATOH1(var.2)); m=9/10; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.419652; --AACAGCTGTY------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0

MA0816.1_rc_shift9 (Ascl2_rc)
; positions_6nt_m10 versus MA0816.1_rc (Ascl2_rc); m=10/10; ncol2=10; w=9; offset=9; strand=R; shift=9; score=0.407859; ---------rrCAGCTGyt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 c 0 0 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 g 0 0 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 t 0 0 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m10_shift0 (positions_6nt_m10positions_6nt_m10)				; positions_6nt_m10 (positions_6nt_m10positions_6nt_m10); m=0 (reference); ncol1=18; shift=0; ncol=19; sbsCCAGCTGGCAGCTgs- ; Alignment reference a 80 88 64 12 10 393 6 12 12 5 19 5 396 12 9 9 43 64 0 c 125 109 187 342 398 9 14 389 11 11 50 404 12 19 402 18 101 131 0 g 132 113 130 55 10 17 392 15 11 402 326 11 5 382 8 7 234 128 0 t 88 115 44 16 7 6 13 9 391 7 30 5 12 12 6 391 47 102 0
MA0500.2_rc_shift1 (MYOG_rc)				; positions_6nt_m10 versus MA0500.2_rc (MYOG_rc); m=1/10; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.488505; -sarCAGCTGyts------ ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0
MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)				; positions_6nt_m10 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=2/10; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.48379; -rmaCAGCTGtky------ ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; positions_6nt_m10 versus MA0521.1_rc (Tcf12_rc); m=3/10; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.483619; -cwsCAGCTGYy------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0
MA1641.1_shift1 (MYF5)				; positions_6nt_m10 versus MA1641.1 (MYF5); m=4/10; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.47768; -gvaCAGCTGtbc------ ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; positions_6nt_m10 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=5/10; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.470977; --csCAGCTGsg------- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; positions_6nt_m10 versus MA1472.1 (BHLHA15(var.2)); m=6/10; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.443093; --avCAGCTGyy------- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0 0
MA1628.1_rc_shift1 (Zic1::Zic2_rc)				; positions_6nt_m10 versus MA1628.1_rc (Zic1::Zic2_rc); m=7/10; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.431874; -ysCCTGCTGbg------- ; cor=; Ncor= a 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 0 0 0 0 0 c 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 0 0 0 0 0 g 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 0 0 0 0 0 t 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0 0 0 0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; positions_6nt_m10 versus MA1100.2_rc (ASCL1_rc); m=8/10; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.426884; --rgCAGCTGyy------- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; positions_6nt_m10 versus MA1467.1 (ATOH1(var.2)); m=9/10; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.419652; --AACAGCTGTY------- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0 0
MA0816.1_rc_shift9 (Ascl2_rc)				; positions_6nt_m10 versus MA0816.1_rc (Ascl2_rc); m=10/10; ncol2=10; w=9; offset=9; strand=R; shift=9; score=0.407859; ---------rrCAGCTGyt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 c 0 0 0 0 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 g 0 0 0 0 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 t 0 0 0 0 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0