One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m14/peak-motifs_positions_6nt_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m14/peak-motifs_positions_6nt_m14_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m14_shift6 ; 10 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_6nt_m14_shift6 (positions_6nt_m14positions_6nt_m14)     
; positions_6nt_m14 (positions_6nt_m14positions_6nt_m14); m=0 (reference); ncol1=10; shift=6; ncol=16; ------rvAGAAAAsv
; Alignment reference
a	0	0	0	0	0	0	794	672	2600	18	2598	2601	2600	2605	527	757
c	0	0	0	0	0	0	582	870	5	2	0	0	0	0	757	714
g	0	0	0	0	0	0	686	687	0	2477	0	0	0	0	851	684
t	0	0	0	0	0	0	543	376	0	108	7	4	5	0	470	450
MA0036.3_rc_shift6 (GATA2_rc) 
; positions_6nt_m14 versus MA0036.3_rc (GATA2_rc); m=1/9; ncol2=11; w=10; offset=0; strand=R; shift=6; score=0.66467; ------rvAGATAAGr
; cor=; Ncor=
a	0	0	0	0	0	0	4845.0	3931.0	10981.0	205.0	13943.0	58.0	13741.0	13360.0	1443.0	5162.0
c	0	0	0	0	0	0	2216.0	3656.0	367.0	126.0	48.0	43.0	21.0	150.0	1223.0	2966.0
g	0	0	0	0	0	0	3874.0	3714.0	492.0	13786.0	77.0	14.0	34.0	259.0	10607.0	4099.0
t	0	0	0	0	0	0	3278.0	2912.0	2373.0	96.0	145.0	14098.0	417.0	444.0	940.0	1986.0
MA1125.1_shift4 (ZNF384) 
; positions_6nt_m14 versus MA1125.1 (ZNF384); m=2/9; ncol2=12; w=10; offset=-2; strand=D; shift=4; score=0.61584; ----wwwmAAAAAAaa
; cor=; Ncor=
a	0	0	0	0	9460.0	9116.0	9522.0	13125.0	30354.0	30191.0	30072.0	30252.0	30202.0	30406.0	20322.0	18916.0
c	0	0	0	0	4945.0	7025.0	3456.0	7691.0	7.0	35.0	21.0	13.0	26.0	6.0	2908.0	3963.0
g	0	0	0	0	5650.0	5133.0	4678.0	4721.0	13.0	19.0	26.0	15.0	14.0	0.0	2767.0	2898.0
t	0	0	0	0	10378.0	9159.0	12777.0	4896.0	59.0	188.0	314.0	153.0	191.0	21.0	4436.0	4656.0
MA0482.2_rc_shift6 (GATA4_rc) 
; positions_6nt_m14 versus MA0482.2_rc (GATA4_rc); m=3/9; ncol2=12; w=10; offset=0; strand=R; shift=6; score=0.601132; ------wvAGATAAGg
; cor=; Ncor=
a	0	0	0	0	0	0	20130.0	16689.0	48187.0	1422.0	57123.0	1646.0	55179.0	55250.0	4699.0	11649.0
c	0	0	0	0	0	0	8955.0	15225.0	1376.0	568.0	539.0	1245.0	808.0	749.0	1103.0	5099.0
g	0	0	0	0	0	0	14580.0	16059.0	1792.0	56544.0	582.0	1703.0	1377.0	1429.0	50062.0	38289.0
t	0	0	0	0	0	0	15349.0	11041.0	7659.0	480.0	770.0	54420.0	1650.0	1586.0	3150.0	3977.0
MA1104.2_rc_shift6 (GATA6_rc) 
; positions_6nt_m14 versus MA1104.2_rc (GATA6_rc); m=4/9; ncol2=13; w=10; offset=0; strand=R; shift=6; score=0.545525; ------waAGATAAGA
; cor=; Ncor=
a	0	0	0	0	0	0	27698.0	23326.0	61257.0	1706.0	76629.0	1124.0	72392.0	74865.0	5514.0	54635.0
c	0	0	0	0	0	0	11605.0	18153.0	1810.0	712.0	456.0	819.0	615.0	580.0	6459.0	7066.0
g	0	0	0	0	0	0	17969.0	19054.0	3228.0	75930.0	852.0	815.0	1393.0	1439.0	62936.0	11831.0
t	0	0	0	0	0	0	22172.0	18911.0	13149.0	1096.0	1507.0	76686.0	5044.0	2560.0	4535.0	5912.0
MA1473.1_shift4 (CDX4) 
; positions_6nt_m14 versus MA1473.1 (CDX4); m=5/9; ncol2=11; w=9; offset=-2; strand=D; shift=4; score=0.531528; ----gGymATAAAac-
; cor=; Ncor=
a	0	0	0	0	3713.0	2533.0	0.0	12392.0	23367.0	0.0	23367.0	23367.0	23367.0	23367.0	2715.0	0
c	0	0	0	0	2229.0	1064.0	14682.0	10976.0	0.0	0.0	0.0	0.0	57.0	6493.0	11454.0	0
g	0	0	0	0	12156.0	23367.0	0.0	25.0	0.0	0.0	0.0	0.0	0.0	2168.0	3758.0	0
t	0	0	0	0	5269.0	98.0	8686.0	0.0	0.0	23367.0	0.0	0.0	0.0	4827.0	5441.0	0
MA1623.1_shift2 (Stat2) 
; positions_6nt_m14 versus MA1623.1 (Stat2); m=6/9; ncol2=13; w=9; offset=-4; strand=D; shift=2; score=0.500583; --rgAAACAGAAAsw-
; cor=; Ncor=
a	0	0	1605.0	969.0	3554.0	3736.0	3738.0	286.0	3146.0	152.0	3700.0	3747.0	3514.0	740.0	1262.0	0
c	0	0	538.0	306.0	76.0	75.0	72.0	2907.0	151.0	45.0	49.0	45.0	147.0	1502.0	758.0	0
g	0	0	1125.0	2287.0	168.0	71.0	87.0	524.0	74.0	3707.0	163.0	98.0	157.0	1180.0	591.0	0
t	0	0	691.0	397.0	161.0	77.0	62.0	242.0	588.0	55.0	47.0	69.0	141.0	537.0	1348.0	0
MA1579.1_shift2 (ZBTB26) 
; positions_6nt_m14 versus MA1579.1 (ZBTB26); m=7/9; ncol2=15; w=10; offset=-4; strand=D; shift=2; score=0.471179; --tdcTCCAGAAaarm
; cor=; Ncor=
a	0	0	399.0	449.0	274.0	9.0	20.0	5.0	1535.0	27.0	1582.0	1134.0	669.0	583.0	432.0	425.0
c	0	0	386.0	342.0	872.0	5.0	1592.0	1503.0	17.0	3.0	22.0	138.0	327.0	378.0	379.0	409.0
g	0	0	402.0	412.0	123.0	5.0	12.0	13.0	49.0	1581.0	9.0	223.0	322.0	338.0	483.0	392.0
t	0	0	440.0	424.0	358.0	1608.0	3.0	106.0	26.0	16.0	14.0	132.0	309.0	328.0	333.0	401.0
MA1616.1_shift7 (Prdm15) 
; positions_6nt_m14 versus MA1616.1 (Prdm15); m=8/9; ncol2=15; w=9; offset=1; strand=D; shift=7; score=0.428204; -------rrgAAAACC
; cor=; Ncor=
a	0	0	0	0	0	0	0	638.0	624.0	252.0	2011.0	2121.0	1942.0	1801.0	67.0	222.0
c	0	0	0	0	0	0	0	486.0	329.0	325.0	60.0	34.0	47.0	138.0	1941.0	1886.0
g	0	0	0	0	0	0	0	560.0	920.0	1333.0	135.0	58.0	200.0	152.0	101.0	107.0
t	0	0	0	0	0	0	0	553.0	364.0	327.0	31.0	24.0	48.0	146.0	128.0	22.0
MA1625.1_shift0 (Stat5b) 
; positions_6nt_m14 versus MA1625.1 (Stat5b); m=9/9; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.420468; yawTTCCcAGAArts-
; cor=; Ncor=
a	614.0	908.0	700.0	51.0	92.0	32.0	74.0	462.0	2474.0	10.0	2554.0	2664.0	901.0	686.0	663.0	0
c	762.0	576.0	607.0	54.0	34.0	2666.0	2176.0	1746.0	60.0	16.0	35.0	25.0	615.0	680.0	768.0	0
g	682.0	647.0	537.0	51.0	34.0	23.0	43.0	127.0	150.0	2717.0	86.0	50.0	711.0	542.0	729.0	0
t	702.0	629.0	916.0	2604.0	2600.0	39.0	467.0	425.0	76.0	17.0	85.0	21.0	533.0	852.0	600.0	0