One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m15/peak-motifs_positions_6nt_m15.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m15/peak-motifs_positions_6nt_m15_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: positions_6nt_m15_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| positions_6nt_m15_shift0 (positions_6nt_m15positions_6nt_m15) |
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|
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; positions_6nt_m15 (positions_6nt_m15positions_6nt_m15); m=0 (reference); ncol1=24; shift=0; ncol=24; bmmsCACAGCAGCTGGCAGCaggs
; Alignment reference
a 16 28 34 7 5 68 3 68 2 1 71 0 2 7 1 7 2 72 2 8 46 17 17 8
c 23 25 21 43 66 1 72 1 2 78 1 0 73 1 0 6 74 0 7 60 18 19 18 21
g 20 17 15 21 5 3 3 6 75 0 1 78 3 1 76 60 3 3 69 7 5 33 30 34
t 20 9 9 8 3 7 1 4 0 0 6 1 1 70 2 6 0 4 1 4 10 10 14 16
|
| MA1629.1_shift2 (Zic2) |
 |
|
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; positions_6nt_m15 versus MA1629.1 (Zic2); m=1/1; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.432593; --mkCaCAGCAGGrrg--------
; cor=; Ncor=
a 0 0 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 0 0 0 0
c 0 0 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 0 0 0 0
g 0 0 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 0 0 0 0
t 0 0 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0 0 0 0 0
|