One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m18/peak-motifs_positions_6nt_m18.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m18/peak-motifs_positions_6nt_m18_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m18_shift0 ; 14 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_6nt_m18_shift0 (positions_6nt_m18positions_6nt_m18)    
; positions_6nt_m18 (positions_6nt_m18positions_6nt_m18); m=0 (reference); ncol1=18; shift=0; ncol=18; sbrCCAGCTGGCAGCTgb
; Alignment reference
a	89	84	159	22	10	392	9	17	11	6	23	5	378	7	9	9	47	55
c	118	106	77	326	388	4	7	374	8	6	48	386	12	19	392	22	90	116
g	118	105	131	50	4	10	383	16	3	392	312	12	10	378	7	7	229	129
t	87	117	45	14	10	6	13	5	390	8	29	9	12	8	4	374	46	112
MA1109.1_rc_shift0 (NEUROD1_rc)
; positions_6nt_m18 versus MA1109.1_rc (NEUROD1_rc); m=1/13; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.510963; syrCCATCTGtyc-----
; cor=; Ncor=
a	525.0	451.0	580.0	168.0	31.0	2157.0	21.0	90.0	18.0	12.0	47.0	298.0	566.0	0	0	0	0	0
c	628.0	599.0	418.0	1962.0	2231.0	19.0	77.0	2152.0	16.0	13.0	494.0	906.0	726.0	0	0	0	0	0
g	591.0	540.0	911.0	93.0	7.0	51.0	150.0	24.0	7.0	2240.0	452.0	323.0	429.0	0	0	0	0	0
t	538.0	692.0	373.0	59.0	13.0	55.0	2034.0	16.0	2241.0	17.0	1289.0	755.0	561.0	0	0	0	0	0
MA0500.2_rc_shift1 (MYOG_rc)
; positions_6nt_m18 versus MA0500.2_rc (MYOG_rc); m=2/13; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.50326; -sarCAGCTGyts-----
; cor=; Ncor=
a	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0	0	0	0	0	0
c	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0	0	0	0	0	0
g	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0	0	0	0	0	0
t	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0	0	0	0	0	0
MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; positions_6nt_m18 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/13; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.490857; -rmaCAGCTGtky-----
; cor=; Ncor=
a	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0	0	0	0	0	0
c	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0	0	0	0	0	0
g	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0	0	0	0	0	0
t	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0	0	0	0	0	0
MA0521.1_rc_shift1 (Tcf12_rc)
; positions_6nt_m18 versus MA0521.1_rc (Tcf12_rc); m=4/13; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.490399; -cwsCAGCTGYy------
; cor=; Ncor=
a	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0	0	0
c	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0	0	0
g	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0	0	0
t	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0	0	0
MA1641.1_shift1 (MYF5)
; positions_6nt_m18 versus MA1641.1 (MYF5); m=5/13; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.488259; -gvaCAGCTGtbc-----
; cor=; Ncor=
a	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0	0	0	0	0	0
c	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0	0	0	0	0	0
g	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0	0	0	0	0	0
t	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0	0	0	0	0	0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; positions_6nt_m18 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=6/13; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.473642; --csCAGCTGsg------
; cor=; Ncor=
a	0	0	3886.0	4449.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4402.0	0	0	0	0	0	0
c	0	0	5625.0	5112.0	18327.0	37.0	53.0	18288.0	52.0	11.0	7267.0	4447.0	0	0	0	0	0	0
g	0	0	4447.0	7269.0	15.0	52.0	18288.0	53.0	37.0	18331.0	5110.0	5621.0	0	0	0	0	0	0
t	0	0	4398.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4453.0	3886.0	0	0	0	0	0	0
MA0796.1_shift1 (TGIF1)
; positions_6nt_m18 versus MA0796.1 (TGIF1); m=7/13; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.46974; -TGACAGCTGTCA-----
; cor=; Ncor=
a	0	39.0	9.0	8828.0	1.0	8861.0	14.0	452.0	1.0	11.0	45.0	36.0	9034.0	0	0	0	0	0
c	0	19.0	8.0	3.0	13304.0	5.0	20.0	10562.0	62.0	13.0	24.0	13485.0	17.0	0	0	0	0	0
g	0	1.0	13499.0	20.0	5.0	22.0	12673.0	2520.0	8.0	13261.0	3.0	13.0	32.0	0	0	0	0	0
t	0	13221.0	4.0	0.0	7.0	4.0	963.0	12.0	12775.0	9.0	12656.0	17.0	33.0	0	0	0	0	0
MA1472.1_shift2 (BHLHA15(var.2))
; positions_6nt_m18 versus MA1472.1 (BHLHA15(var.2)); m=8/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.458412; --avCAGCTGyy------
; cor=; Ncor=
a	0	0	697.0	897.0	47.0	1504.0	11.0	445.0	54.0	0.0	54.0	202.0	0	0	0	0	0	0
c	0	0	281.0	607.0	1504.0	33.0	30.0	1504.0	4.0	0.0	610.0	410.0	0	0	0	0	0	0
g	0	0	357.0	591.0	6.0	33.0	1504.0	72.0	0.0	1504.0	489.0	316.0	0	0	0	0	0	0
t	0	0	170.0	81.0	33.0	137.0	467.0	11.0	1504.0	0.0	1015.0	577.0	0	0	0	0	0	0
MA1467.1_shift2 (ATOH1(var.2))
; positions_6nt_m18 versus MA1467.1 (ATOH1(var.2)); m=9/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.441425; --AACAGCTGTY------
; cor=; Ncor=
a	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0	0	0	0	0	0
c	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0	0	0	0	0	0
g	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0	0	0	0	0	0
t	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0	0	0	0	0	0
MA1100.2_shift2 (ASCL1)
; positions_6nt_m18 versus MA1100.2 (ASCL1); m=10/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.435079; --rrCAGCTGcy------
; cor=; Ncor=
a	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0	0	0	0	0	0
c	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0	0	0	0	0	0
g	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0	0	0	0	0	0
t	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0	0	0	0	0	0
MA1628.1_rc_shift1 (Zic1::Zic2_rc)
; positions_6nt_m18 versus MA1628.1_rc (Zic1::Zic2_rc); m=11/13; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.431084; -ysCCTGCTGbg------
; cor=; Ncor=
a	0	1708.0	2172.0	124.0	90.0	4.0	428.0	74.0	4.0	163.0	1473.0	994.0	0	0	0	0	0	0
c	0	3506.0	2775.0	9631.0	9279.0	627.0	96.0	9527.0	266.0	106.0	2773.0	2206.0	0	0	0	0	0	0
g	0	2154.0	2516.0	91.0	512.0	311.0	9293.0	195.0	384.0	9594.0	2589.0	4620.0	0	0	0	0	0	0
t	0	2524.0	2429.0	46.0	11.0	8950.0	75.0	96.0	9238.0	29.0	3057.0	2072.0	0	0	0	0	0	0
MA0816.1_shift2 (Ascl2)
; positions_6nt_m18 versus MA0816.1 (Ascl2); m=12/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.423848; --arCAGCTGyy------
; cor=; Ncor=
a	0	0	237.0	128.0	3.0	300.0	7.0	3.0	4.0	0.0	6.0	34.0	0	0	0	0	0	0
c	0	0	36.0	41.0	300.0	0.0	23.0	300.0	0.0	1.0	206.0	101.0	0	0	0	0	0	0
g	0	0	63.0	172.0	0.0	0.0	300.0	2.0	0.0	300.0	15.0	28.0	0	0	0	0	0	0
t	0	0	16.0	1.0	1.0	15.0	18.0	1.0	300.0	2.0	94.0	199.0	0	0	0	0	0	0
MA0691.1_shift2 (TFAP4)
; positions_6nt_m18 versus MA0691.1 (TFAP4); m=13/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.405719; --AwCAGCTGwT------
; cor=; Ncor=
a	0	0	3423.0	2159.0	0.0	3423.0	2.0	21.0	1.0	0.0	1810.0	299.0	0	0	0	0	0	0
c	0	0	500.0	546.0	3423.0	2.0	85.0	3423.0	1.0	1.0	114.0	682.0	0	0	0	0	0	0
g	0	0	337.0	62.0	0.0	0.0	3423.0	49.0	0.0	3423.0	333.0	433.0	0	0	0	0	0	0
t	0	0	228.0	1264.0	0.0	0.0	14.0	6.0	3423.0	0.0	1613.0	3423.0	0	0	0	0	0	0