| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| positions_6nt_m18_shift0 (positions_6nt_m18positions_6nt_m18) |
 |
  |
  |
; positions_6nt_m18 (positions_6nt_m18positions_6nt_m18); m=0 (reference); ncol1=18; shift=0; ncol=18; sbrCCAGCTGGCAGCTgb
; Alignment reference
a 89 84 159 22 10 392 9 17 11 6 23 5 378 7 9 9 47 55
c 118 106 77 326 388 4 7 374 8 6 48 386 12 19 392 22 90 116
g 118 105 131 50 4 10 383 16 3 392 312 12 10 378 7 7 229 129
t 87 117 45 14 10 6 13 5 390 8 29 9 12 8 4 374 46 112
|
| MA1109.1_rc_shift0 (NEUROD1_rc) |
 |
|
|
; positions_6nt_m18 versus MA1109.1_rc (NEUROD1_rc); m=1/13; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.510963; syrCCATCTGtyc-----
; cor=; Ncor=
a 525.0 451.0 580.0 168.0 31.0 2157.0 21.0 90.0 18.0 12.0 47.0 298.0 566.0 0 0 0 0 0
c 628.0 599.0 418.0 1962.0 2231.0 19.0 77.0 2152.0 16.0 13.0 494.0 906.0 726.0 0 0 0 0 0
g 591.0 540.0 911.0 93.0 7.0 51.0 150.0 24.0 7.0 2240.0 452.0 323.0 429.0 0 0 0 0 0
t 538.0 692.0 373.0 59.0 13.0 55.0 2034.0 16.0 2241.0 17.0 1289.0 755.0 561.0 0 0 0 0 0
|
| MA0500.2_rc_shift1 (MYOG_rc) |
 |
|
|
; positions_6nt_m18 versus MA0500.2_rc (MYOG_rc); m=2/13; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.50326; -sarCAGCTGyts-----
; cor=; Ncor=
a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0
c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0
g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0
t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0
|
| MA1619.1_rc_shift1 (Ptf1a(var.2)_rc) |
 |
|
|
; positions_6nt_m18 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/13; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.490857; -rmaCAGCTGtky-----
; cor=; Ncor=
a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0
c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0
g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0
t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0
|
| MA0521.1_rc_shift1 (Tcf12_rc) |
 |
|
|
; positions_6nt_m18 versus MA0521.1_rc (Tcf12_rc); m=4/13; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.490399; -cwsCAGCTGYy------
; cor=; Ncor=
a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0
c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0
g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0
t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0
|
| MA1641.1_shift1 (MYF5) |
 |
|
|
; positions_6nt_m18 versus MA1641.1 (MYF5); m=5/13; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.488259; -gvaCAGCTGtbc-----
; cor=; Ncor=
a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0
c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0
g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0
t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0
|
| MA1635.1_rc_shift2 (BHLHE22(var.2)_rc) |
 |
|
|
; positions_6nt_m18 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=6/13; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.473642; --csCAGCTGsg------
; cor=; Ncor=
a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 0 0 0
c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 0 0 0
g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 0 0 0
t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0 0 0 0
|
| MA0796.1_shift1 (TGIF1) |
 |
|
|
; positions_6nt_m18 versus MA0796.1 (TGIF1); m=7/13; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.46974; -TGACAGCTGTCA-----
; cor=; Ncor=
a 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 0 0 0
c 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 0 0 0
g 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 0 0 0
t 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0 0 0 0
|
| MA1472.1_shift2 (BHLHA15(var.2)) |
 |
|
|
; positions_6nt_m18 versus MA1472.1 (BHLHA15(var.2)); m=8/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.458412; --avCAGCTGyy------
; cor=; Ncor=
a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 0 0 0
c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 0 0 0
g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 0 0 0
t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0 0 0 0
|
| MA1467.1_shift2 (ATOH1(var.2)) |
 |
|
|
; positions_6nt_m18 versus MA1467.1 (ATOH1(var.2)); m=9/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.441425; --AACAGCTGTY------
; cor=; Ncor=
a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0
c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0
g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0
t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0
|
| MA1100.2_shift2 (ASCL1) |
 |
|
|
; positions_6nt_m18 versus MA1100.2 (ASCL1); m=10/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.435079; --rrCAGCTGcy------
; cor=; Ncor=
a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0
c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0
g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0
t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0
|
| MA1628.1_rc_shift1 (Zic1::Zic2_rc) |
 |
|
|
; positions_6nt_m18 versus MA1628.1_rc (Zic1::Zic2_rc); m=11/13; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.431084; -ysCCTGCTGbg------
; cor=; Ncor=
a 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 0 0 0 0
c 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 0 0 0 0
g 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 0 0 0 0
t 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0 0 0 0 0
|
| MA0816.1_shift2 (Ascl2) |
 |
|
|
; positions_6nt_m18 versus MA0816.1 (Ascl2); m=12/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.423848; --arCAGCTGyy------
; cor=; Ncor=
a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 0
c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 0
g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 0
t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0 0
|
| MA0691.1_shift2 (TFAP4) |
 |
|
|
; positions_6nt_m18 versus MA0691.1 (TFAP4); m=13/13; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.405719; --AwCAGCTGwT------
; cor=; Ncor=
a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 0
c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 0
g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 0
t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0 0
|