One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m21/peak-motifs_positions_6nt_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m21/peak-motifs_positions_6nt_m21_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m21_shift0 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m21_shift0 (positions_6nt_m21positions_6nt_m21)
; positions_6nt_m21 (positions_6nt_m21positions_6nt_m21); m=0 (reference); ncol1=20; shift=0; ncol=20; ssrGCAGCTGGCAGCAGCyg ; Alignment reference a 57 59 85 22 9 260 4 7 7 7 14 4 254 8 24 233 7 16 61 49 c 75 77 45 11 262 9 4 255 11 5 28 249 11 15 224 19 14 239 76 70 g 101 89 97 242 9 9 270 17 12 268 218 21 11 250 16 19 251 21 51 118 t 49 57 55 7 2 4 4 3 252 2 22 8 6 9 18 11 10 6 94 45

MA0500.2_rc_shift1 (MYOG_rc)
; positions_6nt_m21 versus MA0500.2_rc (MYOG_rc); m=1/11; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.480957; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0 0

MA1631.1_rc_shift0 (ASCL1(var.2)_rc)
; positions_6nt_m21 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/11; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.457305; gsrGCAGGTGchg------- ; cor=; Ncor= a 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 0 0 c 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 0 0 g 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 0 0 t 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; positions_6nt_m21 versus MA0521.1_rc (Tcf12_rc); m=3/11; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.447505; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; positions_6nt_m21 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/11; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.443464; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0

MA1641.1_rc_shift1 (MYF5_rc)
; positions_6nt_m21 versus MA1641.1_rc (MYF5_rc); m=5/11; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.440896; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; positions_6nt_m21 versus MA1635.1 (BHLHE22(var.2)); m=6/11; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.433346; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0 0 0

MA1100.2_shift2 (ASCL1)
; positions_6nt_m21 versus MA1100.2 (ASCL1); m=7/11; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.427849; --rrCAGCTGcy-------- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0 0 0

MA1648.1_rc_shift1 (TCF12(var.2)_rc)
; positions_6nt_m21 versus MA1648.1_rc (TCF12(var.2)_rc); m=8/11; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.415289; -srGCAGGTGss-------- ; cor=; Ncor= a 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 0 0 0 0 c 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 0 0 0 0 g 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 0 0 0 0 t 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0 0 0 0 0

MA0522.3_rc_shift1 (TCF3_rc)
; positions_6nt_m21 versus MA0522.3_rc (TCF3_rc); m=9/11; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.413262; -ssGCAGGTGbs-------- ; cor=; Ncor= a 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 0 0 0 0 c 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 0 0 0 0 g 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 0 0 0 0 t 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0 0 0 0 0

MA0816.1_rc_shift2 (Ascl2_rc)
; positions_6nt_m21 versus MA0816.1_rc (Ascl2_rc); m=10/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.409858; --rrCAGCTGyt-------- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0 0 0 0

MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)
; positions_6nt_m21 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.406505; --rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m21_shift0 (positions_6nt_m21positions_6nt_m21)				; positions_6nt_m21 (positions_6nt_m21positions_6nt_m21); m=0 (reference); ncol1=20; shift=0; ncol=20; ssrGCAGCTGGCAGCAGCyg ; Alignment reference a 57 59 85 22 9 260 4 7 7 7 14 4 254 8 24 233 7 16 61 49 c 75 77 45 11 262 9 4 255 11 5 28 249 11 15 224 19 14 239 76 70 g 101 89 97 242 9 9 270 17 12 268 218 21 11 250 16 19 251 21 51 118 t 49 57 55 7 2 4 4 3 252 2 22 8 6 9 18 11 10 6 94 45
MA0500.2_rc_shift1 (MYOG_rc)				; positions_6nt_m21 versus MA0500.2_rc (MYOG_rc); m=1/11; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.480957; -sarCAGCTGyts------- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0 0 0
MA1631.1_rc_shift0 (ASCL1(var.2)_rc)				; positions_6nt_m21 versus MA1631.1_rc (ASCL1(var.2)_rc); m=2/11; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.457305; gsrGCAGGTGchg------- ; cor=; Ncor= a 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 0 0 0 0 c 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 0 0 0 0 g 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 0 0 0 0 t 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0 0 0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; positions_6nt_m21 versus MA0521.1_rc (Tcf12_rc); m=3/11; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.447505; -cwsCAGCTGYy-------- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0 0 0 0 0
MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)				; positions_6nt_m21 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=4/11; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.443464; -rmaCAGCTGtky------- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 0 0 0 0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 0 0 0 0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 0 0 0 0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0 0 0 0 0 0
MA1641.1_rc_shift1 (MYF5_rc)				; positions_6nt_m21 versus MA1641.1_rc (MYF5_rc); m=5/11; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.440896; -gvaCAGCTGtbc------- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 0 0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 0 0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 0 0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0 0 0 0 0
MA1635.1_shift2 (BHLHE22(var.2))				; positions_6nt_m21 versus MA1635.1 (BHLHE22(var.2)); m=6/11; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.433346; --csCAGCTGsg-------- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0 0 0
MA1100.2_shift2 (ASCL1)				; positions_6nt_m21 versus MA1100.2 (ASCL1); m=7/11; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.427849; --rrCAGCTGcy-------- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0 0 0 0 0
MA1648.1_rc_shift1 (TCF12(var.2)_rc)				; positions_6nt_m21 versus MA1648.1_rc (TCF12(var.2)_rc); m=8/11; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.415289; -srGCAGGTGss-------- ; cor=; Ncor= a 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 0 0 0 0 c 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 0 0 0 0 g 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 0 0 0 0 t 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0 0 0 0 0
MA0522.3_rc_shift1 (TCF3_rc)				; positions_6nt_m21 versus MA0522.3_rc (TCF3_rc); m=9/11; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.413262; -ssGCAGGTGbs-------- ; cor=; Ncor= a 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 0 0 0 0 0 0 0 c 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 0 0 0 0 0 0 0 g 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 0 0 0 0 0 0 0 t 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0 0 0 0 0 0 0 0
MA0816.1_rc_shift2 (Ascl2_rc)				; positions_6nt_m21 versus MA0816.1_rc (Ascl2_rc); m=10/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.409858; --rrCAGCTGyt-------- ; cor=; Ncor= a 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 0 0 0 0 c 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 0 0 0 0 g 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 0 0 0 0 t 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0 0 0 0 0
MA1472.1_rc_shift2 (BHLHA15(var.2)_rc)				; positions_6nt_m21 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.406505; --rrCAGCTGbt-------- ; cor=; Ncor= a 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 0 0 c 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 0 0 g 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 0 0 t 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0 0 0