One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift0 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m4_shift0 (positions_6nt_m4positions_6nt_m4)
; positions_6nt_m4 (positions_6nt_m4positions_6nt_m4); m=0 (reference); ncol1=20; shift=0; ncol=20; ccmcCACAGCTGGCAGCTgs ; Alignment reference a 45 48 84 27 20 169 5 183 5 11 8 3 11 5 181 3 9 5 22 37 c 73 61 50 121 160 12 174 1 4 163 8 4 16 171 4 7 180 5 45 59 g 37 46 38 26 12 7 13 3 181 16 6 183 149 6 1 176 3 4 97 59 t 39 39 22 20 2 6 2 7 4 4 172 4 18 12 8 8 2 180 30 39

MA1629.1_shift2 (Zic2)
; positions_6nt_m4 versus MA1629.1 (Zic2); m=1/11; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.490042; --mkCaCAGCAGGrrg---- ; cor=; Ncor= a 0 0 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 0 0 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 0 0 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 0 0 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_6nt_m4 versus MA1619.1 (Ptf1a(var.2)); m=2/11; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.460237; ---rmaCAGCTGtky----- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_6nt_m4 versus MA1641.1 (MYF5); m=3/11; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.457816; ---gvaCAGCTGtbc----- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0

MA0796.1_shift3 (TGIF1)
; positions_6nt_m4 versus MA0796.1 (TGIF1); m=4/11; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.428051; ---TGACAGCTGTCA----- ; cor=; Ncor= a 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 0 0 0 c 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 0 0 0 g 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 0 0 0 t 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_6nt_m4 versus MA0500.2_rc (MYOG_rc); m=5/11; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.427222; ---sarCAGCTGyts----- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0

MA1571.1_shift3 (TGIF2LX)
; positions_6nt_m4 versus MA1571.1 (TGIF2LX); m=6/11; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.425038; ---TGACAgcTGTCA----- ; cor=; Ncor= a 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 c 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 g 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 t 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_6nt_m4 versus MA0521.1 (Tcf12); m=7/11; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.41838; ----rRCAGCTGswg----- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_6nt_m4 versus MA1635.1 (BHLHE22(var.2)); m=8/11; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.40346; ----csCAGCTGsg------ ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_6nt_m4 versus MA1467.1 (ATOH1(var.2)); m=9/11; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.403026; ----AACAGCTGTY------ ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_6nt_m4 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=10/11; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.40154; ----rrCAGCTGbt------ ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0

MA0002.2_rc_shift0 (RUNX1_rc)
; positions_6nt_m4 versus MA0002.2_rc (RUNX1_rc); m=11/11; ncol2=11; w=11; offset=0; strand=R; shift=0; score=0.400098; waaCCACAram--------- ; cor=; Ncor= a 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 0 0 0 0 0 c 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 0 0 0 0 0 g 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 0 0 0 0 0 t 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m4_shift0 (positions_6nt_m4positions_6nt_m4)				; positions_6nt_m4 (positions_6nt_m4positions_6nt_m4); m=0 (reference); ncol1=20; shift=0; ncol=20; ccmcCACAGCTGGCAGCTgs ; Alignment reference a 45 48 84 27 20 169 5 183 5 11 8 3 11 5 181 3 9 5 22 37 c 73 61 50 121 160 12 174 1 4 163 8 4 16 171 4 7 180 5 45 59 g 37 46 38 26 12 7 13 3 181 16 6 183 149 6 1 176 3 4 97 59 t 39 39 22 20 2 6 2 7 4 4 172 4 18 12 8 8 2 180 30 39
MA1629.1_shift2 (Zic2)				; positions_6nt_m4 versus MA1629.1 (Zic2); m=1/11; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.490042; --mkCaCAGCAGGrrg---- ; cor=; Ncor= a 0 0 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 0 0 c 0 0 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 0 0 g 0 0 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 0 0 t 0 0 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0 0 0
MA1619.1_shift3 (Ptf1a(var.2))				; positions_6nt_m4 versus MA1619.1 (Ptf1a(var.2)); m=2/11; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.460237; ---rmaCAGCTGtky----- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0 0
MA1641.1_shift3 (MYF5)				; positions_6nt_m4 versus MA1641.1 (MYF5); m=3/11; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.457816; ---gvaCAGCTGtbc----- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0 0
MA0796.1_shift3 (TGIF1)				; positions_6nt_m4 versus MA0796.1 (TGIF1); m=4/11; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.428051; ---TGACAGCTGTCA----- ; cor=; Ncor= a 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 0 0 0 c 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 0 0 0 g 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 0 0 0 t 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0 0 0 0
MA0500.2_rc_shift3 (MYOG_rc)				; positions_6nt_m4 versus MA0500.2_rc (MYOG_rc); m=5/11; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.427222; ---sarCAGCTGyts----- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0 0
MA1571.1_shift3 (TGIF2LX)				; positions_6nt_m4 versus MA1571.1 (TGIF2LX); m=6/11; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.425038; ---TGACAgcTGTCA----- ; cor=; Ncor= a 0 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 0 0 0 c 0 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 0 0 0 g 0 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 0 0 0 t 0 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0 0 0 0
MA0521.1_shift4 (Tcf12)				; positions_6nt_m4 versus MA0521.1 (Tcf12); m=7/11; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.41838; ----rRCAGCTGswg----- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0 0
MA1635.1_shift4 (BHLHE22(var.2))				; positions_6nt_m4 versus MA1635.1 (BHLHE22(var.2)); m=8/11; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.40346; ----csCAGCTGsg------ ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0 0
MA1467.1_shift4 (ATOH1(var.2))				; positions_6nt_m4 versus MA1467.1 (ATOH1(var.2)); m=9/11; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.403026; ----AACAGCTGTY------ ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0 0 0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)				; positions_6nt_m4 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=10/11; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.40154; ----rrCAGCTGbt------ ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0 0
MA0002.2_rc_shift0 (RUNX1_rc)				; positions_6nt_m4 versus MA0002.2_rc (RUNX1_rc); m=11/11; ncol2=11; w=11; offset=0; strand=R; shift=0; score=0.400098; waaCCACAram--------- ; cor=; Ncor= a 1053.0 1325.0 1339.0 93.0 13.0 1716.0 53.0 1936.0 656.0 814.0 521.0 0 0 0 0 0 0 0 0 0 c 289.0 81.0 251.0 1848.0 1987.0 70.0 1872.0 7.0 149.0 467.0 696.0 0 0 0 0 0 0 0 0 0 g 158.0 463.0 400.0 42.0 0.0 127.0 75.0 0.0 1072.0 485.0 496.0 0 0 0 0 0 0 0 0 0 t 500.0 131.0 10.0 17.0 0.0 87.0 0.0 57.0 123.0 234.0 287.0 0 0 0 0 0 0 0 0 0