Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10.tf
		file1	1	13	5191
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_7nt_m10 MA0499.2 positions_7nt_m10positions_7nt_m10 MYOD1 0.920 0.920 13 13 13 13 1.0000 1.0000 1.0000 R 0
positions_7nt_m10 MA0745.2 positions_7nt_m10positions_7nt_m10 SNAI2 0.910 0.910 13 13 13 13 1.0000 1.0000 1.0000 R 0
positions_7nt_m10 MA1621.1 positions_7nt_m10positions_7nt_m10 Rbpjl 0.903 0.838 13 14 13 14 0.9286 1.0000 0.9286 R 0
positions_7nt_m10 MA1620.1 positions_7nt_m10positions_7nt_m10 Ptf1a(var.3) 0.905 0.835 13 12 12 13 0.9231 0.9231 1.0000 R 1
positions_7nt_m10 MA0830.2 positions_7nt_m10positions_7nt_m10 TCF4 0.806 0.806 13 13 13 13 1.0000 1.0000 1.0000 R 0
positions_7nt_m10 MA1642.1 positions_7nt_m10positions_7nt_m10 NEUROG2(var.2) 0.793 0.793 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m10 MA1631.1 positions_7nt_m10positions_7nt_m10 ASCL1(var.2) 0.789 0.789 13 13 13 13 1.0000 1.0000 1.0000 R 0
positions_7nt_m10 MA0743.2 positions_7nt_m10positions_7nt_m10 SCRT1 0.893 0.726 13 16 13 16 0.8125 1.0000 0.8125 D -3
positions_7nt_m10 MA0744.2 positions_7nt_m10positions_7nt_m10 SCRT2 0.891 0.724 13 16 13 16 0.8125 1.0000 0.8125 D -3
positions_7nt_m10 MA0521.1 positions_7nt_m10positions_7nt_m10 Tcf12 0.851 0.720 13 11 11 13 0.8462 0.8462 1.0000 D 2
positions_7nt_m10 MA0103.3 positions_7nt_m10positions_7nt_m10 ZEB1 0.847 0.716 13 11 11 13 0.8462 0.8462 1.0000 R 1
positions_7nt_m10 MA1619.1 positions_7nt_m10positions_7nt_m10 Ptf1a(var.2) 0.775 0.715 13 12 12 13 0.9231 0.9231 1.0000 R 1
positions_7nt_m10 MA1641.1 positions_7nt_m10positions_7nt_m10 MYF5 0.773 0.714 13 12 12 13 0.9231 0.9231 1.0000 D 1
positions_7nt_m10 MA0820.1 positions_7nt_m10positions_7nt_m10 FIGLA 0.923 0.710 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA1105.2 positions_7nt_m10positions_7nt_m10 GRHL2 0.766 0.707 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_7nt_m10 MA1109.1 positions_7nt_m10positions_7nt_m10 NEUROD1 0.814 0.698 13 13 12 14 0.8571 0.9231 0.9231 D 1
positions_7nt_m10 MA0832.1 positions_7nt_m10positions_7nt_m10 Tcf21 0.751 0.698 13 14 13 14 0.9286 1.0000 0.9286 D 0
positions_7nt_m10 MA1559.1 positions_7nt_m10positions_7nt_m10 SNAI3 0.904 0.695 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA1485.1 positions_7nt_m10positions_7nt_m10 FERD3L 0.745 0.692 13 14 13 14 0.9286 1.0000 0.9286 R 0
positions_7nt_m10 MA0500.2 positions_7nt_m10positions_7nt_m10 MYOG 0.726 0.670 13 12 12 13 0.9231 0.9231 1.0000 R 1
positions_7nt_m10 MA1648.1 positions_7nt_m10positions_7nt_m10 TCF12(var.2) 0.783 0.663 13 11 11 13 0.8462 0.8462 1.0000 R 1
positions_7nt_m10 MA1558.1 positions_7nt_m10positions_7nt_m10 SNAI1 0.862 0.663 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA1618.1 positions_7nt_m10positions_7nt_m10 Ptf1a 0.769 0.659 13 13 12 14 0.8571 0.9231 0.9231 D 1
positions_7nt_m10 MA0522.3 positions_7nt_m10positions_7nt_m10 TCF3 0.776 0.657 13 11 11 13 0.8462 0.8462 1.0000 R 1
positions_7nt_m10 MA0665.1 positions_7nt_m10positions_7nt_m10 MSC 0.796 0.612 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA1472.1 positions_7nt_m10positions_7nt_m10 BHLHA15(var.2) 0.785 0.604 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA0667.1 positions_7nt_m10positions_7nt_m10 MYF6 0.773 0.594 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA1467.1 positions_7nt_m10positions_7nt_m10 ATOH1(var.2) 0.771 0.593 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA0091.1 positions_7nt_m10positions_7nt_m10 TAL1::TCF3 0.753 0.592 13 12 11 14 0.7857 0.8462 0.9167 R 2
positions_7nt_m10 MA1570.1 positions_7nt_m10positions_7nt_m10 TFAP4(var.2) 0.754 0.580 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA0819.1 positions_7nt_m10positions_7nt_m10 CLOCK 0.750 0.577 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA0691.1 positions_7nt_m10positions_7nt_m10 TFAP4 0.749 0.576 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA1100.2 positions_7nt_m10positions_7nt_m10 ASCL1 0.747 0.574 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA0626.1 positions_7nt_m10positions_7nt_m10 Npas2 0.741 0.570 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA1638.1 positions_7nt_m10positions_7nt_m10 HAND2 0.731 0.562 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA0816.1 positions_7nt_m10positions_7nt_m10 Ascl2 0.727 0.560 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA1635.1 positions_7nt_m10positions_7nt_m10 BHLHE22(var.2) 0.721 0.554 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA0100.3 positions_7nt_m10positions_7nt_m10 MYB 0.718 0.553 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA0633.1 positions_7nt_m10positions_7nt_m10 Twist2 0.710 0.546 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA1493.1 positions_7nt_m10positions_7nt_m10 HES6 0.704 0.542 13 10 10 13 0.7692 0.7692 1.0000 R 2
positions_7nt_m10 MA0058.3 positions_7nt_m10positions_7nt_m10 MAX 0.702 0.540 13 10 10 13 0.7692 0.7692 1.0000 D 2
positions_7nt_m10 MA0807.1 positions_7nt_m10positions_7nt_m10 TBX5 0.812 0.500 13 8 8 13 0.6154 0.6154 1.0000 D 5
positions_7nt_m10 MA0608.1 positions_7nt_m10positions_7nt_m10 Creb3l2 0.716 0.496 13 9 9 13 0.6923 0.6923 1.0000 R 3
positions_7nt_m10 MA0806.1 positions_7nt_m10positions_7nt_m10 TBX4 0.790 0.486 13 8 8 13 0.6154 0.6154 1.0000 D 5
positions_7nt_m10 MA0803.1 positions_7nt_m10positions_7nt_m10 TBX15 0.765 0.471 13 8 8 13 0.6154 0.6154 1.0000 D 5
positions_7nt_m10 MA0805.1 positions_7nt_m10positions_7nt_m10 TBX1 0.740 0.455 13 8 8 13 0.6154 0.6154 1.0000 D 5
positions_7nt_m10 MA0622.1 positions_7nt_m10positions_7nt_m10 Mlxip 0.736 0.453 13 8 8 13 0.6154 0.6154 1.0000 R 3
positions_7nt_m10 MA0801.1 positions_7nt_m10positions_7nt_m10 MGA 0.722 0.444 13 8 8 13 0.6154 0.6154 1.0000 D 5
positions_7nt_m10 MA0607.1 positions_7nt_m10positions_7nt_m10 Bhlha15 0.706 0.434 13 8 8 13 0.6154 0.6154 1.0000 R 3
positions_7nt_m10 MA0130.1 positions_7nt_m10positions_7nt_m10 ZNF354C 0.896 0.413 13 6 6 13 0.4615 0.4615 1.0000 R 7 
 Host name	pedagogix
 Job started	2020-04-14.162332
 Job done	2020-04-14.162432
 Seconds	9.27
	user	9.27
	system	1.17
	cuser	47.08
;	csystem	2.83