One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m10/peak-motifs_positions_7nt_m10_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m10_shift3 ; 51 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_7nt_m10_shift3 (positions_7nt_m10positions_7nt_m10)     
; positions_7nt_m10 (positions_7nt_m10positions_7nt_m10); m=0 (reference); ncol1=13; shift=3; ncol=16; ---ggaACAGGTGgsv
; Alignment reference
a	0	0	0	1287	1090	3409	4949	48	5109	59	247	73	7	325	1083	1371
c	0	0	0	979	1268	531	67	5061	16	41	503	54	11	812	1492	1362
g	0	0	0	2125	1765	1116	129	69	29	5027	4331	36	5142	3282	1390	1420
t	0	0	0	800	1068	135	46	13	37	64	110	5028	31	772	1226	1038
MA0499.2_rc_shift3 (MYOD1_rc) 
; positions_7nt_m10 versus MA0499.2_rc (MYOD1_rc); m=1/50; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.919761; ---rkrACAGGTGcwg
; cor=; Ncor=
a	0	0	0	9358.0	8151.0	9000.0	29644.0	238.0	33130.0	330.0	1226.0	587.0	269.0	2245.0	9291.0	7728.0
c	0	0	0	7495.0	6202.0	4440.0	1699.0	33468.0	366.0	932.0	7336.0	849.0	354.0	21884.0	8444.0	8118.0
g	0	0	0	11760.0	10485.0	19052.0	2555.0	386.0	563.0	32504.0	25275.0	583.0	33328.0	5622.0	7103.0	11279.0
t	0	0	0	5687.0	9462.0	1808.0	402.0	208.0	241.0	534.0	463.0	32281.0	349.0	4549.0	9462.0	7175.0
MA0745.2_rc_shift3 (SNAI2_rc) 
; positions_7nt_m10 versus MA0745.2_rc (SNAI2_rc); m=2/50; ncol2=13; w=13; offset=0; strand=R; shift=3; score= 0.9096; ---rykACAGGTGcrt
; cor=; Ncor=
a	0	0	0	17906.0	8917.0	8747.0	37272.0	126.0	45229.0	344.0	234.0	227.0	622.0	2359.0	16344.0	9958.0
c	0	0	0	8219.0	12297.0	6281.0	1263.0	45257.0	196.0	487.0	326.0	424.0	323.0	26742.0	9490.0	11169.0
g	0	0	0	13476.0	11016.0	18771.0	6467.0	254.0	313.0	44739.0	45144.0	202.0	44463.0	6393.0	12314.0	10031.0
t	0	0	0	6215.0	13586.0	12017.0	814.0	179.0	78.0	246.0	112.0	44963.0	408.0	10322.0	7668.0	14658.0
MA1621.1_rc_shift3 (Rbpjl_rc) 
; positions_7nt_m10 versus MA1621.1_rc (Rbpjl_rc); m=3/50; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.838115; ---grsaCAGGTGtkb
; cor=; Ncor=
a	0	0	0	2286.0	2537.0	2179.0	5784.0	124.0	9313.0	96.0	363.0	86.0	137.0	782.0	1364.0	2210.0
c	0	0	0	2281.0	1958.0	2687.0	1581.0	9295.0	132.0	317.0	672.0	110.0	103.0	1492.0	1802.0	2549.0
g	0	0	0	3003.0	2884.0	3247.0	1718.0	131.0	144.0	9005.0	8533.0	70.0	9273.0	1373.0	3117.0	2427.0
t	0	0	0	2082.0	2273.0	1539.0	569.0	102.0	63.0	234.0	84.0	9386.0	139.0	6005.0	3369.0	2466.0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc) 
; positions_7nt_m10 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=4/50; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.835373; ----rmaCAGGTGtky
; cor=; Ncor=
a	0	0	0	0	2811.0	2745.0	6633.0	142.0	10014.0	129.0	426.0	114.0	107.0	826.0	1599.0	2324.0
c	0	0	0	0	2183.0	3341.0	1516.0	9972.0	98.0	294.0	1182.0	84.0	113.0	1410.0	2379.0	2664.0
g	0	0	0	0	3004.0	2527.0	1615.0	109.0	94.0	9612.0	8567.0	60.0	9887.0	1188.0	3700.0	2469.0
t	0	0	0	0	2293.0	1678.0	527.0	68.0	85.0	256.0	116.0	10033.0	184.0	6867.0	2613.0	2834.0
MA0830.2_rc_shift3 (TCF4_rc) 
; positions_7nt_m10 versus MA0830.2_rc (TCF4_rc); m=5/50; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.805787; ---ssggCAGGTGccg
; cor=; Ncor=
a	0	0	0	6827.0	6430.0	6126.0	3555.0	242.0	27398.0	188.0	751.0	512.0	215.0	1737.0	7059.0	6225.0
c	0	0	0	7662.0	7964.0	4933.0	5281.0	28432.0	679.0	1197.0	1733.0	1295.0	321.0	18498.0	8618.0	7140.0
g	0	0	0	9843.0	8658.0	12872.0	18935.0	540.0	1016.0	27724.0	26765.0	635.0	28686.0	5062.0	6754.0	10052.0
t	0	0	0	5133.0	6413.0	5534.0	1694.0	251.0	372.0	356.0	216.0	27023.0	243.0	4168.0	7034.0	6048.0
MA1642.1_shift3 (NEUROG2(var.2)) 
; positions_7nt_m10 versus MA1642.1 (NEUROG2(var.2)); m=6/50; ncol2=13; w=13; offset=0; strand=D; shift=3; score=0.792761; ---rrraCAGATGGyv
; cor=; Ncor=
a	0	0	0	8690.0	9047.0	12089.0	16448.0	278.0	33720.0	400.0	32746.0	649.0	280.0	1523.0	6665.0	9464.0
c	0	0	0	7353.0	6843.0	6467.0	8154.0	33559.0	211.0	793.0	952.0	904.0	205.0	2966.0	10441.0	9034.0
g	0	0	0	10813.0	10123.0	11114.0	8039.0	317.0	301.0	30392.0	418.0	323.0	33422.0	24998.0	7581.0	8709.0
t	0	0	0	7535.0	8378.0	4721.0	1750.0	237.0	159.0	2806.0	275.0	32515.0	484.0	4904.0	9704.0	7184.0
MA1631.1_rc_shift3 (ASCL1(var.2)_rc) 
; positions_7nt_m10 versus MA1631.1_rc (ASCL1(var.2)_rc); m=7/50; ncol2=13; w=13; offset=0; strand=R; shift=3; score=0.788825; ---gsrGCAGGTGchg
; cor=; Ncor=
a	0	0	0	8032.0	7779.0	9017.0	2394.0	249.0	32756.0	151.0	815.0	618.0	289.0	3290.0	8805.0	7347.0
c	0	0	0	8356.0	8939.0	2966.0	2719.0	33411.0	492.0	607.0	3209.0	860.0	321.0	18576.0	8601.0	8371.0
g	0	0	0	11996.0	10555.0	17883.0	28844.0	445.0	740.0	33402.0	30169.0	563.0	33562.0	6654.0	7998.0	11805.0
t	0	0	0	5972.0	7083.0	4490.0	399.0	251.0	368.0	196.0	163.0	32315.0	184.0	5836.0	8952.0	6833.0
MA0743.2_shift0 (SCRT1) 
; positions_7nt_m10 versus MA0743.2 (SCRT1); m=8/50; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.725751; wawkCAACAGGTGgtw
; cor=; Ncor=
a	16320.0	22932.0	17036.0	4413.0	1456.0	45606.0	57271.0	213.0	58758.0	7017.0	1664.0	883.0	7813.0	10722.0	13382.0	16484.0
c	14118.0	10314.0	8693.0	7425.0	54835.0	8751.0	370.0	59557.0	234.0	557.0	466.0	1098.0	3296.0	8788.0	14903.0	12837.0
g	14307.0	14514.0	10154.0	16396.0	1297.0	1835.0	1566.0	224.0	159.0	51330.0	56500.0	259.0	41190.0	26973.0	13470.0	11049.0
t	15464.0	12449.0	24326.0	31975.0	2621.0	4017.0	1002.0	215.0	1058.0	1305.0	1579.0	57969.0	7910.0	13726.0	18454.0	19839.0
MA0744.2_shift0 (SCRT2) 
; positions_7nt_m10 versus MA0744.2 (SCRT2); m=9/50; ncol2=16; w=13; offset=-3; strand=D; shift=0; score=0.723962; rrwkCAACAGGTggtw
; cor=; Ncor=
a	18855.0	23310.0	29945.0	5353.0	1378.0	53425.0	62366.0	231.0	63880.0	7306.0	1862.0	2078.0	10481.0	13383.0	16058.0	17881.0
c	13345.0	12732.0	6319.0	7236.0	59161.0	5536.0	413.0	64856.0	294.0	728.0	972.0	3475.0	5661.0	11351.0	16085.0	13846.0
g	17680.0	17497.0	12473.0	35769.0	1339.0	2265.0	1878.0	319.0	252.0	56105.0	60636.0	1168.0	38133.0	25288.0	14716.0	12430.0
t	15730.0	12071.0	16873.0	17252.0	3732.0	4384.0	953.0	204.0	1184.0	1471.0	2140.0	58889.0	11335.0	15588.0	18751.0	21453.0
MA0521.1_shift5 (Tcf12) 
; positions_7nt_m10 versus MA0521.1 (Tcf12); m=10/50; ncol2=11; w=11; offset=2; strand=D; shift=5; score=0.719727; -----rRCAGCTGswg
; cor=; Ncor=
a	0	0	0	0	0	6170.0	8820.0	0.0	12895.0	8.0	184.0	0.0	0.0	1875.0	3912.0	2863.0
c	0	0	0	0	0	1585.0	124.0	12895.0	0.0	0.0	10822.0	0.0	0.0	5527.0	2416.0	3005.0
g	0	0	0	0	0	5123.0	3951.0	0.0	0.0	12887.0	1889.0	0.0	12895.0	3811.0	2925.0	4836.0
t	0	0	0	0	0	17.0	0.0	0.0	0.0	0.0	0.0	12895.0	0.0	1682.0	3642.0	2191.0
MA0103.3_rc_shift4 (ZEB1_rc) 
; positions_7nt_m10 versus MA0103.3_rc (ZEB1_rc); m=11/50; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.716319; ----sssCAGGTGss-
; cor=; Ncor=
a	0	0	0	0	3856.0	3153.0	3408.0	129.0	19269.0	30.0	122.0	1.0	662.0	4715.0	3692.0	0
c	0	0	0	0	5828.0	6601.0	5178.0	19381.0	355.0	649.0	97.0	223.0	158.0	5179.0	5228.0	0
g	0	0	0	0	6955.0	6117.0	9561.0	178.0	501.0	19257.0	19878.0	0.0	19195.0	5550.0	7998.0	0
t	0	0	0	0	3490.0	4258.0	1982.0	441.0	4.0	193.0	32.0	19905.0	114.0	4685.0	3211.0	0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc) 
; positions_7nt_m10 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=12/50; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.714989; ----rmaCAGCTGtky
; cor=; Ncor=
a	0	0	0	0	1871.0	1974.0	4341.0	49.0	7121.0	33.0	223.0	28.0	27.0	529.0	1216.0	1607.0
c	0	0	0	0	1803.0	2426.0	1065.0	7150.0	40.0	299.0	6689.0	65.0	28.0	1308.0	1629.0	1974.0
g	0	0	0	0	1977.0	1632.0	1312.0	27.0	66.0	6697.0	307.0	41.0	7149.0	1070.0	2430.0	1803.0
t	0	0	0	0	1602.0	1221.0	535.0	27.0	26.0	224.0	34.0	7119.0	49.0	4346.0	1978.0	1869.0
MA1641.1_shift4 (MYF5) 
; positions_7nt_m10 versus MA1641.1 (MYF5); m=13/50; ncol2=12; w=12; offset=1; strand=D; shift=4; score=0.713659; ----gvaCAGCTGtbc
; cor=; Ncor=
a	0	0	0	0	2698.0	3507.0	7490.0	95.0	10965.0	100.0	223.0	129.0	42.0	578.0	1572.0	2554.0
c	0	0	0	0	2700.0	2986.0	1368.0	10911.0	47.0	230.0	10657.0	68.0	161.0	1775.0	3146.0	3258.0
g	0	0	0	0	3258.0	3145.0	1774.0	161.0	69.0	10658.0	230.0	47.0	10912.0	1368.0	2985.0	2701.0
t	0	0	0	0	2554.0	1572.0	578.0	43.0	129.0	222.0	100.0	10966.0	95.0	7489.0	3507.0	2697.0
MA0820.1_rc_shift5 (FIGLA_rc) 
; positions_7nt_m10 versus MA0820.1_rc (FIGLA_rc); m=14/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.709668; -----wmCAGGTGkw-
; cor=; Ncor=
a	0	0	0	0	0	753.0	832.0	65.0	1780.0	0.0	0.0	14.0	29.0	237.0	449.0	0
c	0	0	0	0	0	289.0	569.0	1780.0	17.0	311.0	527.0	0.0	0.0	160.0	175.0	0
g	0	0	0	0	0	283.0	225.0	33.0	0.0	1780.0	1780.0	46.0	1780.0	693.0	270.0	0
t	0	0	0	0	0	455.0	154.0	36.0	56.0	9.0	0.0	1780.0	0.0	690.0	886.0	0
MA1105.2_shift3 (GRHL2) 
; positions_7nt_m10 versus MA1105.2 (GRHL2); m=15/50; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.70717; ---arAACAGGTTtk-
; cor=; Ncor=
a	0	0	0	14483.0	17842.0	36467.0	37065.0	503.0	34024.0	2824.0	642.0	1878.0	1752.0	7061.0	8868.0	0
c	0	0	0	9741.0	6996.0	1147.0	712.0	40446.0	1543.0	581.0	987.0	2331.0	2000.0	9341.0	8528.0	0
g	0	0	0	9161.0	10776.0	2646.0	2841.0	609.0	485.0	37226.0	39624.0	748.0	1220.0	7961.0	10536.0	0
t	0	0	0	8493.0	6264.0	1618.0	1260.0	320.0	5826.0	1247.0	625.0	36921.0	36906.0	17515.0	13946.0	0
MA1109.1_shift4 (NEUROD1) 
; positions_7nt_m10 versus MA1109.1 (NEUROD1); m=16/50; ncol2=13; w=12; offset=1; strand=D; shift=4; score=0.697747; ----graCAGATGGyr
; cor=; Ncor=
a	0	0	0	0	561.0	755.0	1289.0	17.0	2241.0	16.0	2034.0	55.0	13.0	59.0	373.0	692.0
c	0	0	0	0	429.0	323.0	452.0	2240.0	7.0	24.0	150.0	51.0	7.0	93.0	911.0	540.0
g	0	0	0	0	726.0	906.0	494.0	13.0	16.0	2152.0	77.0	19.0	2231.0	1962.0	418.0	599.0
t	0	0	0	0	566.0	298.0	47.0	12.0	18.0	90.0	21.0	2157.0	31.0	168.0	580.0	451.0
MA0832.1_shift3 (Tcf21) 
; positions_7nt_m10 versus MA0832.1 (Tcf21); m=17/50; ncol2=14; w=13; offset=0; strand=D; shift=3; score=0.697512; ---ryAACAGCTGTTr
; cor=; Ncor=
a	0	0	0	55.0	28.0	171.0	171.0	0.0	171.0	0.0	0.0	0.0	0.0	0.0	5.0	50.0
c	0	0	0	29.0	76.0	1.0	10.0	171.0	1.0	0.0	171.0	0.0	0.0	4.0	23.0	23.0
g	0	0	0	70.0	22.0	23.0	0.0	0.0	0.0	171.0	1.0	0.0	171.0	20.0	0.0	80.0
t	0	0	0	17.0	46.0	3.0	0.0	0.0	0.0	2.0	1.0	171.0	0.0	171.0	171.0	19.0
MA1559.1_shift5 (SNAI3) 
; positions_7nt_m10 versus MA1559.1 (SNAI3); m=18/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.695331; -----arCAGGTGya-
; cor=; Ncor=
a	0	0	0	0	0	2952.0	3917.0	23.0	6248.0	118.0	0.0	0.0	94.0	432.0	4680.0	0
c	0	0	0	0	0	661.0	0.0	6248.0	0.0	29.0	18.0	12.0	0.0	6248.0	688.0	0
g	0	0	0	0	0	1525.0	2331.0	0.0	34.0	6248.0	6248.0	28.0	6248.0	1701.0	1569.0	0
t	0	0	0	0	0	1110.0	183.0	35.0	3.0	43.0	0.0	6248.0	30.0	3161.0	553.0	0
MA1485.1_rc_shift3 (FERD3L_rc) 
; positions_7nt_m10 versus MA1485.1_rc (FERD3L_rc); m=19/50; ncol2=14; w=13; offset=0; strand=R; shift=3; score=0.691964; ---GTrACAGCTGkyr
; cor=; Ncor=
a	0	0	0	48.0	958.0	14919.0	21065.0	0.0	29605.0	0.0	4691.0	144.0	0.0	1710.0	74.0	9557.0
c	0	0	0	0.0	9815.0	5920.0	3395.0	29605.0	210.0	471.0	29605.0	118.0	0.0	3142.0	12703.0	348.0
g	0	0	0	29605.0	809.0	8664.0	3878.0	0.0	129.0	29605.0	841.0	126.0	29605.0	9363.0	2443.0	20049.0
t	0	0	0	0.0	29605.0	103.0	1268.0	0.0	81.0	3649.0	0.0	29605.0	36.0	15390.0	14384.0	450.0
MA0500.2_rc_shift4 (MYOG_rc) 
; positions_7nt_m10 versus MA0500.2_rc (MYOG_rc); m=20/50; ncol2=12; w=12; offset=1; strand=R; shift=4; score=0.669889; ----sarCAGCTGyts
; cor=; Ncor=
a	0	0	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0
c	0	0	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0
g	0	0	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0
t	0	0	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0
MA1648.1_rc_shift4 (TCF12(var.2)_rc) 
; positions_7nt_m10 versus MA1648.1_rc (TCF12(var.2)_rc); m=21/50; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.662907; ----srGCAGGTGss-
; cor=; Ncor=
a	0	0	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0	0
c	0	0	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0	0
g	0	0	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0	0
t	0	0	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0	0
MA1558.1_shift5 (SNAI1) 
; positions_7nt_m10 versus MA1558.1 (SNAI1); m=22/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.662827; -----drCAGGTGyr-
; cor=; Ncor=
a	0	0	0	0	0	5274.0	6993.0	446.0	19982.0	1766.0	72.0	38.0	706.0	1639.0	10088.0	0
c	0	0	0	0	0	3187.0	501.0	19982.0	297.0	517.0	5.0	0.0	0.0	10938.0	4592.0	0
g	0	0	0	0	0	6410.0	12989.0	275.0	91.0	19982.0	19982.0	42.0	19982.0	5306.0	9894.0	0
t	0	0	0	0	0	5112.0	3518.0	340.0	568.0	306.0	28.0	19982.0	311.0	9044.0	6356.0	0
MA1618.1_shift4 (Ptf1a) 
; positions_7nt_m10 versus MA1618.1 (Ptf1a); m=23/50; ncol2=13; w=12; offset=1; strand=D; shift=4; score=0.658939; ----dmaCAGATGttk
; cor=; Ncor=
a	0	0	0	0	4092.0	4476.0	8554.0	133.0	14064.0	250.0	12132.0	126.0	241.0	965.0	1511.0	3491.0
c	0	0	0	0	2989.0	3662.0	2747.0	14006.0	118.0	466.0	1724.0	224.0	122.0	2058.0	2341.0	3601.0
g	0	0	0	0	3661.0	3568.0	2414.0	130.0	153.0	13072.0	437.0	118.0	13868.0	2854.0	2295.0	3664.0
t	0	0	0	0	3699.0	2735.0	726.0	172.0	106.0	653.0	148.0	13973.0	210.0	8564.0	8294.0	3685.0
MA0522.3_rc_shift4 (TCF3_rc) 
; positions_7nt_m10 versus MA0522.3_rc (TCF3_rc); m=24/50; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.656901; ----ssGCAGGTGbs-
; cor=; Ncor=
a	0	0	0	0	6432.0	7233.0	1237.0	492.0	27539.0	283.0	950.0	375.0	705.0	4528.0	6240.0	0
c	0	0	0	0	9222.0	8025.0	987.0	28642.0	1339.0	2652.0	1362.0	1574.0	708.0	9432.0	8539.0	0
g	0	0	0	0	10122.0	8727.0	28742.0	1038.0	2003.0	27199.0	28640.0	396.0	29379.0	9269.0	10212.0	0
t	0	0	0	0	5485.0	7276.0	295.0	1089.0	380.0	1127.0	309.0	28916.0	469.0	8032.0	6270.0	0
MA0665.1_rc_shift5 (MSC_rc) 
; positions_7nt_m10 versus MA0665.1_rc (MSC_rc); m=25/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.612474; -----AACAGCTGTT-
; cor=; Ncor=
a	0	0	0	0	0	69.0	69.0	4.0	69.0	0.0	0.0	0.0	1.0	0.0	7.0	0
c	0	0	0	0	0	4.0	4.0	69.0	0.0	3.0	69.0	0.0	3.0	3.0	18.0	0
g	0	0	0	0	0	9.0	10.0	0.0	0.0	69.0	12.0	0.0	69.0	12.0	0.0	0
t	0	0	0	0	0	0.0	3.0	0.0	0.0	0.0	0.0	69.0	0.0	69.0	69.0	0
MA1472.1_rc_shift5 (BHLHA15(var.2)_rc) 
; positions_7nt_m10 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=26/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.603872; -----rrCAGCTGbt-
; cor=; Ncor=
a	0	0	0	0	0	577.0	1015.0	0.0	1504.0	11.0	467.0	137.0	33.0	81.0	170.0	0
c	0	0	0	0	0	316.0	489.0	1504.0	0.0	72.0	1504.0	33.0	6.0	591.0	357.0	0
g	0	0	0	0	0	410.0	610.0	0.0	4.0	1504.0	30.0	33.0	1504.0	607.0	281.0	0
t	0	0	0	0	0	202.0	54.0	0.0	54.0	445.0	11.0	1504.0	47.0	897.0	697.0	0
MA0667.1_rc_shift5 (MYF6_rc) 
; positions_7nt_m10 versus MA0667.1_rc (MYF6_rc); m=27/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.594267; -----RACAGyTGTT-
; cor=; Ncor=
a	0	0	0	0	0	444.0	444.0	0.0	444.0	56.0	12.0	0.0	0.0	1.0	7.0	0
c	0	0	0	0	0	7.0	0.0	444.0	0.0	35.0	256.0	7.0	0.0	24.0	70.0	0
g	0	0	0	0	0	159.0	22.0	2.0	0.0	353.0	30.0	3.0	444.0	18.0	12.0	0
t	0	0	0	0	0	0.0	2.0	0.0	11.0	12.0	159.0	444.0	0.0	444.0	444.0	0
MA1467.1_shift5 (ATOH1(var.2)) 
; positions_7nt_m10 versus MA1467.1 (ATOH1(var.2)); m=28/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.593279; -----AACAGCTGTY-
; cor=; Ncor=
a	0	0	0	0	0	1368.0	1008.0	0.0	1368.0	0.0	204.0	0.0	0.0	93.0	0.0	0
c	0	0	0	0	0	171.0	179.0	1368.0	0.0	0.0	1368.0	0.0	0.0	296.0	943.0	0
g	0	0	0	0	0	466.0	182.0	0.0	0.0	1368.0	0.0	0.0	1368.0	35.0	0.0	0
t	0	0	0	0	0	0.0	0.0	0.0	76.0	181.0	0.0	1368.0	0.0	944.0	426.0	0
MA0091.1_rc_shift5 (TAL1::TCF3_rc) 
; positions_7nt_m10 versus MA0091.1_rc (TAL1::TCF3_rc); m=29/50; ncol2=12; w=11; offset=2; strand=R; shift=5; score=0.591967; -----AmCAKMTGkTc
; cor=; Ncor=
a	0	0	0	0	0	34.0	21.0	1.0	44.0	0.0	32.0	0.0	0.0	0.0	2.0	5.0
c	0	0	0	0	0	2.0	20.0	43.0	0.0	0.0	11.0	0.0	1.0	0.0	3.0	20.0
g	0	0	0	0	0	4.0	3.0	0.0	0.0	32.0	1.0	0.0	43.0	24.0	0.0	10.0
t	0	0	0	0	0	4.0	0.0	0.0	0.0	12.0	0.0	44.0	0.0	20.0	39.0	9.0
MA1570.1_shift5 (TFAP4(var.2)) 
; positions_7nt_m10 versus MA1570.1 (TFAP4(var.2)); m=30/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.580105; -----ahCAyrTGkt-
; cor=; Ncor=
a	0	0	0	0	0	479.0	217.0	0.0	479.0	0.0	479.0	0.0	0.0	103.0	60.0	0
c	0	0	0	0	0	130.0	144.0	479.0	0.0	220.0	149.0	0.0	3.0	14.0	210.0	0
g	0	0	0	0	0	197.0	0.0	0.0	14.0	161.0	287.0	0.0	479.0	156.0	110.0	0
t	0	0	0	0	0	39.0	129.0	0.0	0.0	479.0	0.0	479.0	0.0	206.0	479.0	0
MA0819.1_shift5 (CLOCK) 
; positions_7nt_m10 versus MA0819.1 (CLOCK); m=31/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.577219; -----aACACGTGty-
; cor=; Ncor=
a	0	0	0	0	0	226.0	429.0	11.0	429.0	16.0	40.0	3.0	0.0	1.0	89.0	0
c	0	0	0	0	0	35.0	85.0	429.0	5.0	429.0	0.0	5.0	3.0	152.0	128.0	0
g	0	0	0	0	0	93.0	89.0	2.0	15.0	0.0	429.0	5.0	429.0	110.0	39.0	0
t	0	0	0	0	0	75.0	13.0	2.0	0.0	28.0	0.0	429.0	9.0	429.0	174.0	0
MA0691.1_shift5 (TFAP4) 
; positions_7nt_m10 versus MA0691.1 (TFAP4); m=32/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.576351; -----AwCAGCTGwT-
; cor=; Ncor=
a	0	0	0	0	0	3423.0	2159.0	0.0	3423.0	2.0	21.0	1.0	0.0	1810.0	299.0	0
c	0	0	0	0	0	500.0	546.0	3423.0	2.0	85.0	3423.0	1.0	1.0	114.0	682.0	0
g	0	0	0	0	0	337.0	62.0	0.0	0.0	3423.0	49.0	0.0	3423.0	333.0	433.0	0
t	0	0	0	0	0	228.0	1264.0	0.0	0.0	14.0	6.0	3423.0	0.0	1613.0	3423.0	0
MA1100.2_shift5 (ASCL1) 
; positions_7nt_m10 versus MA1100.2 (ASCL1); m=33/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.574489; -----rrCAGCTGcy-
; cor=; Ncor=
a	0	0	0	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0
c	0	0	0	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0
g	0	0	0	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0
t	0	0	0	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0
MA0626.1_rc_shift5 (Npas2_rc) 
; positions_7nt_m10 versus MA0626.1_rc (Npas2_rc); m=34/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.570008; -----kaCACGTGsh-
; cor=; Ncor=
a	0	0	0	0	0	202.0	566.0	0.0	999.0	0.0	0.0	0.0	0.0	48.0	257.0	0
c	0	0	0	0	0	202.0	188.0	918.0	0.0	918.0	0.0	0.0	0.0	420.0	293.0	0
g	0	0	0	0	0	299.0	172.0	0.0	0.0	0.0	918.0	0.0	999.0	377.0	177.0	0
t	0	0	0	0	0	297.0	74.0	81.0	0.0	81.0	81.0	999.0	0.0	154.0	273.0	0
MA1638.1_shift5 (HAND2) 
; positions_7nt_m10 versus MA1638.1 (HAND2); m=35/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.562408; -----amCAGATGby-
; cor=; Ncor=
a	0	0	0	0	0	10136.0	8836.0	19.0	29222.0	12.0	30192.0	14.0	234.0	5217.0	6165.0	0
c	0	0	0	0	0	5564.0	11298.0	30062.0	410.0	42.0	30.0	2276.0	149.0	7690.0	10227.0	0
g	0	0	0	0	0	7463.0	6994.0	132.0	647.0	30144.0	38.0	31.0	29851.0	8878.0	6108.0	0
t	0	0	0	0	0	7120.0	3155.0	70.0	4.0	85.0	23.0	27962.0	49.0	8498.0	7783.0	0
MA0816.1_rc_shift5 (Ascl2_rc) 
; positions_7nt_m10 versus MA0816.1_rc (Ascl2_rc); m=36/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.559573; -----rrCAGCTGyt-
; cor=; Ncor=
a	0	0	0	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0
c	0	0	0	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0
g	0	0	0	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0
t	0	0	0	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0
MA1635.1_shift5 (BHLHE22(var.2)) 
; positions_7nt_m10 versus MA1635.1 (BHLHE22(var.2)); m=37/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.554356; -----csCAGCTGsg-
; cor=; Ncor=
a	0	0	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0
c	0	0	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0
g	0	0	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0
t	0	0	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0
MA0100.3_rc_shift5 (MYB_rc) 
; positions_7nt_m10 versus MA0100.3_rc (MYB_rc); m=38/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.552645; -----kdCAGTTGvk-
; cor=; Ncor=
a	0	0	0	0	0	352.0	497.0	0.0	1398.0	0.0	6.0	7.0	9.0	410.0	380.0	0
c	0	0	0	0	0	225.0	147.0	1516.0	68.0	0.0	0.0	39.0	5.0	397.0	300.0	0
g	0	0	0	0	0	528.0	482.0	3.0	60.0	1527.0	2.0	3.0	1513.0	428.0	422.0	0
t	0	0	0	0	0	422.0	401.0	8.0	1.0	0.0	1519.0	1478.0	0.0	292.0	425.0	0
MA0633.1_rc_shift5 (Twist2_rc) 
; positions_7nt_m10 versus MA0633.1_rc (Twist2_rc); m=39/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.546405; -----mACATATGky-
; cor=; Ncor=
a	0	0	0	0	0	365.0	745.0	0.0	1000.0	0.0	783.0	0.0	0.0	69.0	200.0	0
c	0	0	0	0	0	272.0	155.0	1000.0	0.0	211.0	0.0	0.0	0.0	69.0	298.0	0
g	0	0	0	0	0	181.0	50.0	0.0	0.0	0.0	217.0	0.0	1000.0	580.0	200.0	0
t	0	0	0	0	0	181.0	50.0	0.0	0.0	789.0	0.0	1000.0	0.0	282.0	302.0	0
MA1493.1_rc_shift5 (HES6_rc) 
; positions_7nt_m10 versus MA1493.1_rc (HES6_rc); m=40/50; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.541619; -----rACACGTGCC-
; cor=; Ncor=
a	0	0	0	0	0	209.0	439.0	0.0	439.0	0.0	16.0	11.0	15.0	13.0	43.0	0
c	0	0	0	0	0	0.0	0.0	439.0	29.0	439.0	9.0	9.0	19.0	439.0	439.0	0
g	0	0	0	0	0	152.0	21.0	0.0	7.0	12.0	439.0	0.0	439.0	35.0	39.0	0
t	0	0	0	0	0	79.0	33.0	0.0	0.0	10.0	2.0	439.0	17.0	16.0	12.0	0
MA0058.3_shift5 (MAX) 
; positions_7nt_m10 versus MA0058.3 (MAX); m=41/50; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.540006; -----amCACGTGcy-
; cor=; Ncor=
a	0	0	0	0	0	3307.0	1915.0	39.0	6876.0	0.0	329.0	69.0	0.0	1341.0	1122.0	0
c	0	0	0	0	0	1556.0	2809.0	6876.0	0.0	6876.0	39.0	159.0	27.0	2450.0	2225.0	0
g	0	0	0	0	0	1295.0	1514.0	0.0	87.0	7.0	6876.0	20.0	6876.0	1638.0	986.0	0
t	0	0	0	0	0	719.0	637.0	0.0	38.0	229.0	19.0	6876.0	36.0	1446.0	2543.0	0
MA0807.1_shift8 (TBX5) 
; positions_7nt_m10 versus MA0807.1 (TBX5); m=42/50; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.499769; --------AGGTGTkA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	1804.0	235.0	0.0	45.0	27.0	162.0	126.0	1804.0
c	0	0	0	0	0	0	0	0	89.0	190.0	0.0	131.0	0.0	225.0	616.0	76.0
g	0	0	0	0	0	0	0	0	409.0	1804.0	1804.0	166.0	1804.0	201.0	1804.0	343.0
t	0	0	0	0	0	0	0	0	207.0	133.0	28.0	1804.0	0.0	1804.0	915.0	283.0
MA0608.1_rc_shift6 (Creb3l2_rc) 
; positions_7nt_m10 versus MA0608.1_rc (Creb3l2_rc); m=43/50; ncol2=9; w=9; offset=3; strand=R; shift=6; score=0.49593; ------hCACGTGkM-
; cor=; Ncor=
a	0	0	0	0	0	0	498.0	1.0	996.0	1.0	1.0	1.0	1.0	126.0	250.0	0
c	0	0	0	0	0	0	250.0	854.0	1.0	996.0	1.0	1.0	126.0	1.0	745.0	0
g	0	0	0	0	0	0	2.0	143.0	1.0	1.0	996.0	1.0	872.0	623.0	2.0	0
t	0	0	0	0	0	0	250.0	1.0	1.0	1.0	1.0	996.0	1.0	250.0	2.0	0
MA0806.1_shift8 (TBX4) 
; positions_7nt_m10 versus MA0806.1 (TBX4); m=44/50; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.48631; --------AGGTGTgA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	18646.0	3082.0	38.0	0.0	0.0	1551.0	1355.0	18646.0
c	0	0	0	0	0	0	0	0	437.0	2328.0	189.0	1644.0	0.0	2859.0	5396.0	588.0
g	0	0	0	0	0	0	0	0	2353.0	18646.0	18646.0	191.0	18646.0	304.0	18646.0	1733.0
t	0	0	0	0	0	0	0	0	1283.0	1162.0	33.0	18646.0	0.0	18646.0	8384.0	965.0
MA0803.1_shift8 (TBX15) 
; positions_7nt_m10 versus MA0803.1 (TBX15); m=45/50; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.470984; --------AGGTGTGA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	10502.0	458.0	19.0	61.0	0.0	140.0	44.0	10502.0
c	0	0	0	0	0	0	0	0	74.0	101.0	7.0	175.0	8.0	435.0	454.0	71.0
g	0	0	0	0	0	0	0	0	664.0	10502.0	10502.0	245.0	10502.0	324.0	10502.0	306.0
t	0	0	0	0	0	0	0	0	112.0	103.0	0.0	10502.0	0.0	10502.0	937.0	96.0
MA0805.1_shift8 (TBX1) 
; positions_7nt_m10 versus MA0805.1 (TBX1); m=46/50; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.455244; --------AGGTGTGA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	11931.0	1560.0	0.0	28.0	0.0	142.0	141.0	11931.0
c	0	0	0	0	0	0	0	0	113.0	711.0	0.0	214.0	5.0	613.0	720.0	33.0
g	0	0	0	0	0	0	0	0	1007.0	11931.0	11931.0	141.0	11931.0	109.0	11931.0	18.0
t	0	0	0	0	0	0	0	0	564.0	669.0	0.0	11931.0	0.0	11931.0	1039.0	0.0
MA0622.1_rc_shift6 (Mlxip_rc) 
; positions_7nt_m10 versus MA0622.1_rc (Mlxip_rc); m=47/50; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.452707; ------mCACGTGv--
; cor=; Ncor=
a	0	0	0	0	0	0	499.0	0.0	999.0	0.0	0.0	0.0	0.0	263.0	0	0
c	0	0	0	0	0	0	250.0	999.0	0.0	999.0	0.0	0.0	0.0	421.0	0	0
g	0	0	0	0	0	0	63.0	0.0	0.0	0.0	999.0	0.0	999.0	263.0	0	0
t	0	0	0	0	0	0	188.0	0.0	0.0	0.0	0.0	999.0	0.0	53.0	0	0
MA0801.1_shift8 (MGA) 
; positions_7nt_m10 versus MA0801.1 (MGA); m=48/50; ncol2=8; w=8; offset=5; strand=D; shift=8; score=0.444013; --------AGGTGTGA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	30489.0	4310.0	16.0	12.0	14.0	1042.0	689.0	30489.0
c	0	0	0	0	0	0	0	0	1151.0	3737.0	509.0	3534.0	1.0	3089.0	1753.0	110.0
g	0	0	0	0	0	0	0	0	8873.0	30489.0	30489.0	96.0	30489.0	381.0	30489.0	920.0
t	0	0	0	0	0	0	0	0	4160.0	1929.0	104.0	30489.0	11.0	30489.0	6465.0	274.0
MA0607.1_rc_shift6 (Bhlha15_rc) 
; positions_7nt_m10 versus MA0607.1_rc (Bhlha15_rc); m=49/50; ncol2=8; w=8; offset=3; strand=R; shift=6; score=0.434293; ------aCATATGs--
; cor=; Ncor=
a	0	0	0	0	0	0	614.0	0.0	999.0	0.0	799.0	0.0	0.0	1.0	0	0
c	0	0	0	0	0	0	154.0	999.0	0.0	0.0	200.0	0.0	0.0	286.0	0	0
g	0	0	0	0	0	0	231.0	0.0	0.0	200.0	0.0	0.0	999.0	571.0	0	0
t	0	0	0	0	0	0	1.0	0.0	0.0	799.0	0.0	999.0	0.0	143.0	0	0
MA0130.1_rc_shift10 (ZNF354C_rc) 
; positions_7nt_m10 versus MA0130.1_rc (ZNF354C_rc); m=50/50; ncol2=6; w=6; offset=7; strand=R; shift=10; score=0.413388; ----------GTGGAk
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0.0	0.0	0.0	0.0	11.0	0.0
c	0	0	0	0	0	0	0	0	0	0	1.0	0.0	0.0	0.0	0.0	3.0
g	0	0	0	0	0	0	0	0	0	0	15.0	0.0	16.0	16.0	2.0	6.0
t	0	0	0	0	0	0	0	0	0	0	0.0	16.0	0.0	0.0	3.0	7.0