One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m12/peak-motifs_positions_7nt_m12.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m12/peak-motifs_positions_7nt_m12_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m12_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m12_shift0 (positions_7nt_m12positions_7nt_m12)
; positions_7nt_m12 (positions_7nt_m12positions_7nt_m12); m=0 (reference); ncol1=14; shift=0; ncol=14; gsACCAGCTGAgvs ; Alignment reference a 734 643 2031 495 41 2861 48 31 49 27 2599 330 763 636 c 719 819 313 2135 2870 30 36 2886 28 69 55 606 841 938 g 897 823 419 274 24 26 2843 30 21 2842 121 1705 843 753 t 612 677 199 58 27 45 35 15 2864 24 187 321 515 635

MA0832.1_rc_shift0 (Tcf21_rc)
; positions_7nt_m12 versus MA0832.1_rc (Tcf21_rc); m=1/18; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.712128; ryAACAGCTGTTry ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0

MA1629.1_rc_shift0 (Zic2_rc)
; positions_7nt_m12 versus MA1629.1_rc (Zic2_rc); m=2/18; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.711483; cyyCCTGCTGtGmk ; cor=; Ncor= a 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 2506.0 c 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 2761.0 g 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 3507.0 t 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0 3145.0

MA1485.1_shift0 (FERD3L)
; positions_7nt_m12 versus MA1485.1 (FERD3L); m=3/18; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.70161; GyrmCAGCTGTyAC ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0

MA1619.1_shift1 (Ptf1a(var.2))
; positions_7nt_m12 versus MA1619.1 (Ptf1a(var.2)); m=4/18; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.698548; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0500.2_rc_shift1 (MYOG_rc)
; positions_7nt_m12 versus MA0500.2_rc (MYOG_rc); m=5/18; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.698241; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1641.1_rc_shift1 (MYF5_rc)
; positions_7nt_m12 versus MA1641.1_rc (MYF5_rc); m=6/18; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.684271; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA0521.1_shift2 (Tcf12)
; positions_7nt_m12 versus MA0521.1 (Tcf12); m=7/18; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.635177; --rRCAGCTGswg- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0691.1_shift2 (TFAP4)
; positions_7nt_m12 versus MA0691.1 (TFAP4); m=8/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.614862; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1593.1_shift1 (ZNF317)
; positions_7nt_m12 versus MA1593.1 (ZNF317); m=9/18; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.613865; -wrACAGCAGAyw- ; cor=; Ncor= a 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA1635.1_shift2 (BHLHE22(var.2))
; positions_7nt_m12 versus MA1635.1 (BHLHE22(var.2)); m=10/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.602633; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; positions_7nt_m12 versus MA1472.1 (BHLHA15(var.2)); m=11/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.583799; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1628.1_rc_shift1 (Zic1::Zic2_rc)
; positions_7nt_m12 versus MA1628.1_rc (Zic1::Zic2_rc); m=12/18; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.561498; -ysCCTGCTGbg-- ; cor=; Ncor= a 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 c 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 g 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 t 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0

MA0816.1_shift2 (Ascl2)
; positions_7nt_m12 versus MA0816.1 (Ascl2); m=13/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.55923; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; positions_7nt_m12 versus MA1467.1 (ATOH1(var.2)); m=14/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.548216; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA1100.2_rc_shift2 (ASCL1_rc)
; positions_7nt_m12 versus MA1100.2_rc (ASCL1_rc); m=15/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.544498; --rgCAGCTGyy-- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0048.2_rc_shift2 (NHLH1_rc)
; positions_7nt_m12 versus MA0048.2_rc (NHLH1_rc); m=16/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.544175; --mGCAGCTGCg-- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0665.1_shift2 (MSC)
; positions_7nt_m12 versus MA0665.1 (MSC); m=17/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.523832; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0820.1_shift2 (FIGLA)
; positions_7nt_m12 versus MA0820.1 (FIGLA); m=18/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.522131; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m12_shift0 (positions_7nt_m12positions_7nt_m12)				; positions_7nt_m12 (positions_7nt_m12positions_7nt_m12); m=0 (reference); ncol1=14; shift=0; ncol=14; gsACCAGCTGAgvs ; Alignment reference a 734 643 2031 495 41 2861 48 31 49 27 2599 330 763 636 c 719 819 313 2135 2870 30 36 2886 28 69 55 606 841 938 g 897 823 419 274 24 26 2843 30 21 2842 121 1705 843 753 t 612 677 199 58 27 45 35 15 2864 24 187 321 515 635
MA0832.1_rc_shift0 (Tcf21_rc)				; positions_7nt_m12 versus MA0832.1_rc (Tcf21_rc); m=1/18; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.712128; ryAACAGCTGTTry ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0
MA1629.1_rc_shift0 (Zic2_rc)				; positions_7nt_m12 versus MA1629.1_rc (Zic2_rc); m=2/18; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.711483; cyyCCTGCTGtGmk ; cor=; Ncor= a 2104.0 1641.0 2472.0 154.0 410.0 441.0 298.0 67.0 268.0 120.0 2437.0 240.0 3893.0 2506.0 c 5314.0 4979.0 4911.0 11465.0 11184.0 735.0 269.0 11484.0 186.0 188.0 829.0 585.0 3821.0 2761.0 g 2168.0 1661.0 1476.0 204.0 133.0 118.0 11272.0 228.0 391.0 11476.0 1765.0 9933.0 1755.0 3507.0 t 2333.0 3638.0 3060.0 96.0 192.0 10625.0 80.0 140.0 11074.0 135.0 6888.0 1161.0 2450.0 3145.0
MA1485.1_shift0 (FERD3L)				; positions_7nt_m12 versus MA1485.1 (FERD3L); m=3/18; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.70161; GyrmCAGCTGTyAC ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0
MA1619.1_shift1 (Ptf1a(var.2))				; positions_7nt_m12 versus MA1619.1 (Ptf1a(var.2)); m=4/18; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.698548; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA0500.2_rc_shift1 (MYOG_rc)				; positions_7nt_m12 versus MA0500.2_rc (MYOG_rc); m=5/18; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.698241; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA1641.1_rc_shift1 (MYF5_rc)				; positions_7nt_m12 versus MA1641.1_rc (MYF5_rc); m=6/18; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.684271; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0
MA0521.1_shift2 (Tcf12)				; positions_7nt_m12 versus MA0521.1 (Tcf12); m=7/18; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.635177; --rRCAGCTGswg- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA0691.1_shift2 (TFAP4)				; positions_7nt_m12 versus MA0691.1 (TFAP4); m=8/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.614862; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA1593.1_shift1 (ZNF317)				; positions_7nt_m12 versus MA1593.1 (ZNF317); m=9/18; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.613865; -wrACAGCAGAyw- ; cor=; Ncor= a 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0
MA1635.1_shift2 (BHLHE22(var.2))				; positions_7nt_m12 versus MA1635.1 (BHLHE22(var.2)); m=10/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.602633; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; positions_7nt_m12 versus MA1472.1 (BHLHA15(var.2)); m=11/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.583799; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
MA1628.1_rc_shift1 (Zic1::Zic2_rc)				; positions_7nt_m12 versus MA1628.1_rc (Zic1::Zic2_rc); m=12/18; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.561498; -ysCCTGCTGbg-- ; cor=; Ncor= a 0 1708.0 2172.0 124.0 90.0 4.0 428.0 74.0 4.0 163.0 1473.0 994.0 0 0 c 0 3506.0 2775.0 9631.0 9279.0 627.0 96.0 9527.0 266.0 106.0 2773.0 2206.0 0 0 g 0 2154.0 2516.0 91.0 512.0 311.0 9293.0 195.0 384.0 9594.0 2589.0 4620.0 0 0 t 0 2524.0 2429.0 46.0 11.0 8950.0 75.0 96.0 9238.0 29.0 3057.0 2072.0 0 0
MA0816.1_shift2 (Ascl2)				; positions_7nt_m12 versus MA0816.1 (Ascl2); m=13/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.55923; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; positions_7nt_m12 versus MA1467.1 (ATOH1(var.2)); m=14/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.548216; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0
MA1100.2_rc_shift2 (ASCL1_rc)				; positions_7nt_m12 versus MA1100.2_rc (ASCL1_rc); m=15/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.544498; --rgCAGCTGyy-- ; cor=; Ncor= a 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA0048.2_rc_shift2 (NHLH1_rc)				; positions_7nt_m12 versus MA0048.2_rc (NHLH1_rc); m=16/18; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.544175; --mGCAGCTGCg-- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA0665.1_shift2 (MSC)				; positions_7nt_m12 versus MA0665.1 (MSC); m=17/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.523832; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0
MA0820.1_shift2 (FIGLA)				; positions_7nt_m12 versus MA0820.1 (FIGLA); m=18/18; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.522131; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0