One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m14/peak-motifs_positions_7nt_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m14/peak-motifs_positions_7nt_m14_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m14_shift0 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m14_shift0 (positions_7nt_m14positions_7nt_m14)
; positions_7nt_m14 (positions_7nt_m14positions_7nt_m14); m=0 (reference); ncol1=18; shift=0; ncol=18; scAGCTGCCAGCTGCbgs ; Alignment reference a 122 68 457 9 5 21 6 36 11 481 6 3 23 6 16 75 107 90 c 175 306 19 19 497 14 23 426 502 9 21 514 15 25 475 156 129 166 g 137 105 37 492 15 9 493 37 11 19 493 10 9 490 28 157 181 177 t 97 52 18 11 14 487 9 32 7 22 11 4 484 10 12 143 114 98

MA0500.2_shift5 (MYOG)
; positions_7nt_m14 versus MA0500.2 (MYOG); m=1/12; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.523156; -----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 c 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 g 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 t 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0

MA0521.1_shift6 (Tcf12)
; positions_7nt_m14 versus MA0521.1 (Tcf12); m=2/12; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.490822; ------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1619.1_shift5 (Ptf1a(var.2))
; positions_7nt_m14 versus MA1619.1 (Ptf1a(var.2)); m=3/12; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.482307; -----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1641.1_shift5 (MYF5)
; positions_7nt_m14 versus MA1641.1 (MYF5); m=4/12; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.477686; -----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1635.1_shift6 (BHLHE22(var.2))
; positions_7nt_m14 versus MA1635.1 (BHLHE22(var.2)); m=5/12; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.475315; ------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1100.2_rc_shift6 (ASCL1_rc)
; positions_7nt_m14 versus MA1100.2_rc (ASCL1_rc); m=6/12; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.465962; ------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA1648.1_shift6 (TCF12(var.2))
; positions_7nt_m14 versus MA1648.1 (TCF12(var.2)); m=7/12; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.453048; ------ssCACCTGCys- ; cor=; Ncor= a 0 0 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0

MA0522.3_shift6 (TCF3)
; positions_7nt_m14 versus MA0522.3 (TCF3); m=8/12; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.450968; ------svCACCTGCss- ; cor=; Ncor= a 0 0 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0

MA0816.1_shift6 (Ascl2)
; positions_7nt_m14 versus MA0816.1 (Ascl2); m=9/12; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.44391; ------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1472.1_shift6 (BHLHA15(var.2))
; positions_7nt_m14 versus MA1472.1 (BHLHA15(var.2)); m=10/12; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.441204; ------avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA0048.2_rc_shift6 (NHLH1_rc)
; positions_7nt_m14 versus MA0048.2_rc (NHLH1_rc); m=11/12; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.435959; ------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1467.1_rc_shift6 (ATOH1(var.2)_rc)
; positions_7nt_m14 versus MA1467.1_rc (ATOH1(var.2)_rc); m=12/12; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.419727; ------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m14_shift0 (positions_7nt_m14positions_7nt_m14)				; positions_7nt_m14 (positions_7nt_m14positions_7nt_m14); m=0 (reference); ncol1=18; shift=0; ncol=18; scAGCTGCCAGCTGCbgs ; Alignment reference a 122 68 457 9 5 21 6 36 11 481 6 3 23 6 16 75 107 90 c 175 306 19 19 497 14 23 426 502 9 21 514 15 25 475 156 129 166 g 137 105 37 492 15 9 493 37 11 19 493 10 9 490 28 157 181 177 t 97 52 18 11 14 487 9 32 7 22 11 4 484 10 12 143 114 98
MA0500.2_shift5 (MYOG)				; positions_7nt_m14 versus MA0500.2 (MYOG); m=1/12; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.523156; -----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 c 0 0 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 g 0 0 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 t 0 0 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0
MA0521.1_shift6 (Tcf12)				; positions_7nt_m14 versus MA0521.1 (Tcf12); m=2/12; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.490822; ------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA1619.1_shift5 (Ptf1a(var.2))				; positions_7nt_m14 versus MA1619.1 (Ptf1a(var.2)); m=3/12; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.482307; -----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA1641.1_shift5 (MYF5)				; positions_7nt_m14 versus MA1641.1 (MYF5); m=4/12; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.477686; -----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1635.1_shift6 (BHLHE22(var.2))				; positions_7nt_m14 versus MA1635.1 (BHLHE22(var.2)); m=5/12; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.475315; ------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1100.2_rc_shift6 (ASCL1_rc)				; positions_7nt_m14 versus MA1100.2_rc (ASCL1_rc); m=6/12; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.465962; ------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA1648.1_shift6 (TCF12(var.2))				; positions_7nt_m14 versus MA1648.1 (TCF12(var.2)); m=7/12; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.453048; ------ssCACCTGCys- ; cor=; Ncor= a 0 0 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0
MA0522.3_shift6 (TCF3)				; positions_7nt_m14 versus MA0522.3 (TCF3); m=8/12; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.450968; ------svCACCTGCss- ; cor=; Ncor= a 0 0 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0
MA0816.1_shift6 (Ascl2)				; positions_7nt_m14 versus MA0816.1 (Ascl2); m=9/12; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.44391; ------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA1472.1_shift6 (BHLHA15(var.2))				; positions_7nt_m14 versus MA1472.1 (BHLHA15(var.2)); m=10/12; ncol2=10; w=10; offset=6; strand=D; shift=6; score=0.441204; ------avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
MA0048.2_rc_shift6 (NHLH1_rc)				; positions_7nt_m14 versus MA0048.2_rc (NHLH1_rc); m=11/12; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.435959; ------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA1467.1_rc_shift6 (ATOH1(var.2)_rc)				; positions_7nt_m14 versus MA1467.1_rc (ATOH1(var.2)_rc); m=12/12; ncol2=10; w=10; offset=6; strand=R; shift=6; score=0.419727; ------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0