One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m16/peak-motifs_positions_7nt_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m16/peak-motifs_positions_7nt_m16_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m16_shift1 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m16_shift1 (positions_7nt_m16positions_7nt_m16)
; positions_7nt_m16 (positions_7nt_m16positions_7nt_m16); m=0 (reference); ncol1=15; shift=1; ncol=18; -rrGCACAGCTGAgvs-- ; Alignment reference a 0 756 749 167 297 2580 25 2647 14 40 44 19 2104 373 721 607 0 0 c 0 668 418 311 2046 47 2581 12 24 2566 19 49 162 567 760 768 0 0 g 0 768 970 2065 323 31 69 14 2645 79 24 2623 135 1377 725 726 0 0 t 0 510 565 159 36 44 27 29 19 17 2615 11 301 385 496 601 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; positions_7nt_m16 versus MA1619.1 (Ptf1a(var.2)); m=1/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.68707; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift3 (MYF5)
; positions_7nt_m16 versus MA1641.1 (MYF5); m=2/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.677246; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0832.1_shift2 (Tcf21)
; positions_7nt_m16 versus MA0832.1 (Tcf21); m=3/20; ncol2=14; w=14; offset=1; strand=D; shift=2; score=0.657734; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1621.1_rc_shift2 (Rbpjl_rc)
; positions_7nt_m16 versus MA1621.1_rc (Rbpjl_rc); m=4/20; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.655729; --grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; positions_7nt_m16 versus MA0499.2_rc (MYOD1_rc); m=5/20; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.629572; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0521.1_shift4 (Tcf12)
; positions_7nt_m16 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.62581; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; positions_7nt_m16 versus MA0500.2_rc (MYOG_rc); m=7/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.624882; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1593.1_shift3 (ZNF317)
; positions_7nt_m16 versus MA1593.1 (ZNF317); m=8/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.60128; ---wrACAGCAGAyw--- ; cor=; Ncor= a 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 0 0 c 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 0 0 g 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 0 0 t 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; positions_7nt_m16 versus MA1529.1_rc (NHLH2_rc); m=9/20; ncol2=18; w=15; offset=-1; strand=R; shift=0; score=0.589847; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1620.1_rc_shift3 (Ptf1a(var.3)_rc)
; positions_7nt_m16 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=10/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.582523; ---rmaCAGGTGtky--- ; cor=; Ncor= a 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 0 c 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 0 g 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 0 t 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; positions_7nt_m16 versus MA1635.1 (BHLHE22(var.2)); m=11/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.555368; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; positions_7nt_m16 versus MA0691.1 (TFAP4); m=12/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.555176; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; positions_7nt_m16 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.540368; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; positions_7nt_m16 versus MA0048.2 (NHLH1); m=14/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.529263; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; positions_7nt_m16 versus MA1467.1 (ATOH1(var.2)); m=15/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.523445; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; positions_7nt_m16 versus MA1100.2_rc (ASCL1_rc); m=16/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.503088; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0665.1_shift4 (MSC)
; positions_7nt_m16 versus MA0665.1 (MSC); m=17/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.499495; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0816.1_shift4 (Ascl2)
; positions_7nt_m16 versus MA0816.1 (Ascl2); m=18/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.497236; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; positions_7nt_m16 versus MA0820.1_rc (FIGLA_rc); m=19/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.47344; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; positions_7nt_m16 versus MA0667.1_rc (MYF6_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.470072; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m16_shift1 (positions_7nt_m16positions_7nt_m16)				; positions_7nt_m16 (positions_7nt_m16positions_7nt_m16); m=0 (reference); ncol1=15; shift=1; ncol=18; -rrGCACAGCTGAgvs-- ; Alignment reference a 0 756 749 167 297 2580 25 2647 14 40 44 19 2104 373 721 607 0 0 c 0 668 418 311 2046 47 2581 12 24 2566 19 49 162 567 760 768 0 0 g 0 768 970 2065 323 31 69 14 2645 79 24 2623 135 1377 725 726 0 0 t 0 510 565 159 36 44 27 29 19 17 2615 11 301 385 496 601 0 0
MA1619.1_shift3 (Ptf1a(var.2))				; positions_7nt_m16 versus MA1619.1 (Ptf1a(var.2)); m=1/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.68707; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0
MA1641.1_shift3 (MYF5)				; positions_7nt_m16 versus MA1641.1 (MYF5); m=2/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.677246; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0
MA0832.1_shift2 (Tcf21)				; positions_7nt_m16 versus MA0832.1 (Tcf21); m=3/20; ncol2=14; w=14; offset=1; strand=D; shift=2; score=0.657734; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0
MA1621.1_rc_shift2 (Rbpjl_rc)				; positions_7nt_m16 versus MA1621.1_rc (Rbpjl_rc); m=4/20; ncol2=14; w=14; offset=1; strand=R; shift=2; score=0.655729; --grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0
MA0499.2_rc_shift2 (MYOD1_rc)				; positions_7nt_m16 versus MA0499.2_rc (MYOD1_rc); m=5/20; ncol2=13; w=13; offset=1; strand=R; shift=2; score=0.629572; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0
MA0521.1_shift4 (Tcf12)				; positions_7nt_m16 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=3; strand=D; shift=4; score=0.62581; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0
MA0500.2_rc_shift3 (MYOG_rc)				; positions_7nt_m16 versus MA0500.2_rc (MYOG_rc); m=7/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.624882; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA1593.1_shift3 (ZNF317)				; positions_7nt_m16 versus MA1593.1 (ZNF317); m=8/20; ncol2=12; w=12; offset=2; strand=D; shift=3; score=0.60128; ---wrACAGCAGAyw--- ; cor=; Ncor= a 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 0 0 c 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 0 0 g 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 0 0 t 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0 0 0
MA1529.1_rc_shift0 (NHLH2_rc)				; positions_7nt_m16 versus MA1529.1_rc (NHLH2_rc); m=9/20; ncol2=18; w=15; offset=-1; strand=R; shift=0; score=0.589847; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0
MA1620.1_rc_shift3 (Ptf1a(var.3)_rc)				; positions_7nt_m16 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=10/20; ncol2=12; w=12; offset=2; strand=R; shift=3; score=0.582523; ---rmaCAGGTGtky--- ; cor=; Ncor= a 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 0 c 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 0 g 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 0 t 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0 0
MA1635.1_shift4 (BHLHE22(var.2))				; positions_7nt_m16 versus MA1635.1 (BHLHE22(var.2)); m=11/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.555368; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA0691.1_shift4 (TFAP4)				; positions_7nt_m16 versus MA0691.1 (TFAP4); m=12/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.555176; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)				; positions_7nt_m16 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.540368; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA0048.2_shift4 (NHLH1)				; positions_7nt_m16 versus MA0048.2 (NHLH1); m=14/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.529263; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA1467.1_shift4 (ATOH1(var.2))				; positions_7nt_m16 versus MA1467.1 (ATOH1(var.2)); m=15/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.523445; ----AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0
MA1100.2_rc_shift4 (ASCL1_rc)				; positions_7nt_m16 versus MA1100.2_rc (ASCL1_rc); m=16/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.503088; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA0665.1_shift4 (MSC)				; positions_7nt_m16 versus MA0665.1 (MSC); m=17/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.499495; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0
MA0816.1_shift4 (Ascl2)				; positions_7nt_m16 versus MA0816.1 (Ascl2); m=18/20; ncol2=10; w=10; offset=3; strand=D; shift=4; score=0.497236; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA0820.1_rc_shift4 (FIGLA_rc)				; positions_7nt_m16 versus MA0820.1_rc (FIGLA_rc); m=19/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.47344; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0
MA0667.1_rc_shift4 (MYF6_rc)				; positions_7nt_m16 versus MA0667.1_rc (MYF6_rc); m=20/20; ncol2=10; w=10; offset=3; strand=R; shift=4; score=0.470072; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0