Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m17/peak-motifs_positions_7nt_m17.tf
		file1	1	13	6685
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_7nt_m17 MA0499.2 positions_7nt_m17positions_7nt_m17 MYOD1 0.931 0.931 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m17 MA0745.2 positions_7nt_m17positions_7nt_m17 SNAI2 0.926 0.926 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m17 MA1620.1 positions_7nt_m17positions_7nt_m17 Ptf1a(var.3) 0.965 0.891 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_7nt_m17 MA1621.1 positions_7nt_m17positions_7nt_m17 Rbpjl 0.955 0.887 13 14 13 14 0.9286 1.0000 0.9286 D -1
positions_7nt_m17 MA0830.2 positions_7nt_m17positions_7nt_m17 TCF4 0.812 0.812 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m17 MA1631.1 positions_7nt_m17positions_7nt_m17 ASCL1(var.2) 0.796 0.796 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m17 MA1641.1 positions_7nt_m17positions_7nt_m17 MYF5 0.853 0.788 13 12 12 13 0.9231 0.9231 1.0000 R 0
positions_7nt_m17 MA1619.1 positions_7nt_m17positions_7nt_m17 Ptf1a(var.2) 0.848 0.783 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_7nt_m17 MA0832.1 positions_7nt_m17positions_7nt_m17 Tcf21 0.824 0.765 13 14 13 14 0.9286 1.0000 0.9286 R -1
positions_7nt_m17 MA1642.1 positions_7nt_m17positions_7nt_m17 NEUROG2(var.2) 0.749 0.749 13 13 13 13 1.0000 1.0000 1.0000 R 0
positions_7nt_m17 MA0521.1 positions_7nt_m17positions_7nt_m17 Tcf12 0.863 0.730 13 11 11 13 0.8462 0.8462 1.0000 R 0
positions_7nt_m17 MA1485.1 positions_7nt_m17positions_7nt_m17 FERD3L 0.777 0.721 13 14 13 14 0.9286 1.0000 0.9286 D -1
positions_7nt_m17 MA0103.3 positions_7nt_m17positions_7nt_m17 ZEB1 0.852 0.721 13 11 11 13 0.8462 0.8462 1.0000 D 1
positions_7nt_m17 MA1105.2 positions_7nt_m17positions_7nt_m17 GRHL2 0.781 0.721 13 12 12 13 0.9231 0.9231 1.0000 R 1
positions_7nt_m17 MA0500.2 positions_7nt_m17positions_7nt_m17 MYOG 0.776 0.716 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_7nt_m17 MA0820.1 positions_7nt_m17positions_7nt_m17 FIGLA 0.929 0.714 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA0744.2 positions_7nt_m17positions_7nt_m17 SCRT2 0.872 0.708 13 16 13 16 0.8125 1.0000 0.8125 R 0
positions_7nt_m17 MA0743.2 positions_7nt_m17positions_7nt_m17 SCRT1 0.871 0.708 13 16 13 16 0.8125 1.0000 0.8125 R 0
positions_7nt_m17 MA0783.1 positions_7nt_m17positions_7nt_m17 PKNOX2 0.766 0.707 13 12 12 13 0.9231 0.9231 1.0000 R 0
positions_7nt_m17 MA1618.1 positions_7nt_m17positions_7nt_m17 Ptf1a 0.707 0.707 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_7nt_m17 MA1559.1 positions_7nt_m17positions_7nt_m17 SNAI3 0.914 0.703 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA1558.1 positions_7nt_m17positions_7nt_m17 SNAI1 0.880 0.677 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA0797.1 positions_7nt_m17positions_7nt_m17 TGIF2 0.730 0.674 13 12 12 13 0.9231 0.9231 1.0000 R 0
positions_7nt_m17 MA0665.1 positions_7nt_m17positions_7nt_m17 MSC 0.867 0.667 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA1648.1 positions_7nt_m17positions_7nt_m17 TCF12(var.2) 0.787 0.666 13 11 11 13 0.8462 0.8462 1.0000 D 1
positions_7nt_m17 MA0522.3 positions_7nt_m17positions_7nt_m17 TCF3 0.781 0.661 13 11 11 13 0.8462 0.8462 1.0000 D 1
positions_7nt_m17 MA0667.1 positions_7nt_m17positions_7nt_m17 MYF6 0.859 0.660 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA1571.1 positions_7nt_m17positions_7nt_m17 TGIF2LX 0.715 0.660 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_7nt_m17 MA0796.1 positions_7nt_m17positions_7nt_m17 TGIF1 0.713 0.658 13 12 12 13 0.9231 0.9231 1.0000 R 0
positions_7nt_m17 MA1467.1 positions_7nt_m17positions_7nt_m17 ATOH1(var.2) 0.850 0.654 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA1572.1 positions_7nt_m17positions_7nt_m17 TGIF2LY 0.706 0.652 13 12 12 13 0.9231 0.9231 1.0000 D 0
positions_7nt_m17 MA1109.1 positions_7nt_m17positions_7nt_m17 NEUROD1 0.755 0.647 13 13 12 14 0.8571 0.9231 0.9231 R -1
positions_7nt_m17 MA1472.1 positions_7nt_m17positions_7nt_m17 BHLHA15(var.2) 0.833 0.641 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA0691.1 positions_7nt_m17positions_7nt_m17 TFAP4 0.801 0.616 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA0819.1 positions_7nt_m17positions_7nt_m17 CLOCK 0.788 0.606 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA1100.2 positions_7nt_m17positions_7nt_m17 ASCL1 0.786 0.605 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA0816.1 positions_7nt_m17positions_7nt_m17 Ascl2 0.777 0.598 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA1570.1 positions_7nt_m17positions_7nt_m17 TFAP4(var.2) 0.770 0.593 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA0091.1 positions_7nt_m17positions_7nt_m17 TAL1::TCF3 0.752 0.591 13 12 11 14 0.7857 0.8462 0.9167 D -1
positions_7nt_m17 MA1635.1 positions_7nt_m17positions_7nt_m17 BHLHE22(var.2) 0.753 0.579 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA1638.1 positions_7nt_m17positions_7nt_m17 HAND2 0.738 0.568 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA0100.3 positions_7nt_m17positions_7nt_m17 MYB 0.728 0.560 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA0626.1 positions_7nt_m17positions_7nt_m17 Npas2 0.724 0.557 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA0807.1 positions_7nt_m17positions_7nt_m17 TBX5 0.892 0.549 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_7nt_m17 MA1493.1 positions_7nt_m17positions_7nt_m17 HES6 0.704 0.542 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA0048.2 positions_7nt_m17positions_7nt_m17 NHLH1 0.703 0.541 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA0806.1 positions_7nt_m17positions_7nt_m17 TBX4 0.879 0.541 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_7nt_m17 MA1108.2 positions_7nt_m17positions_7nt_m17 MXI1 0.703 0.540 13 10 10 13 0.7692 0.7692 1.0000 D 1
positions_7nt_m17 MA0058.3 positions_7nt_m17positions_7nt_m17 MAX 0.700 0.539 13 10 10 13 0.7692 0.7692 1.0000 R 1
positions_7nt_m17 MA0803.1 positions_7nt_m17positions_7nt_m17 TBX15 0.855 0.526 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_7nt_m17 MA0805.1 positions_7nt_m17positions_7nt_m17 TBX1 0.834 0.513 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_7nt_m17 MA0801.1 positions_7nt_m17positions_7nt_m17 MGA 0.815 0.502 13 8 8 13 0.6154 0.6154 1.0000 R 0
positions_7nt_m17 MA1567.1 positions_7nt_m17positions_7nt_m17 TBX6 0.755 0.486 13 10 9 14 0.6429 0.6923 0.9000 R -1
positions_7nt_m17 MA1566.1 positions_7nt_m17positions_7nt_m17 TBX3 0.742 0.477 13 10 9 14 0.6429 0.6923 0.9000 R -1
positions_7nt_m17 MA0690.1 positions_7nt_m17positions_7nt_m17 TBX21 0.703 0.452 13 10 9 14 0.6429 0.6923 0.9000 R -1
positions_7nt_m17 MA0802.1 positions_7nt_m17positions_7nt_m17 TBR1 0.838 0.447 13 10 8 15 0.5333 0.6154 0.8000 R -2
positions_7nt_m17 MA0774.1 positions_7nt_m17positions_7nt_m17 MEIS2 0.721 0.444 13 8 8 13 0.6154 0.6154 1.0000 R 5
positions_7nt_m17 MA0622.1 positions_7nt_m17positions_7nt_m17 Mlxip 0.718 0.442 13 8 8 13 0.6154 0.6154 1.0000 D 2
positions_7nt_m17 MA0688.1 positions_7nt_m17positions_7nt_m17 TBX2 0.733 0.440 13 11 9 15 0.6000 0.6923 0.8182 R -2
positions_7nt_m17 MA0689.1 positions_7nt_m17positions_7nt_m17 TBX20 0.701 0.421 13 11 9 15 0.6000 0.6923 0.8182 R -2 
 Host name	pedagogix
 Job started	2020-04-14.162614
 Job done	2020-04-14.162723
 Seconds	9.22
	user	9.23
	system	1.21
	cuser	54.55
;	csystem	3.33