compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18_vs_db_jaspar_core_nonredundant_vertebrates Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18.tf Output files alignments_1ton Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab match_table_txt Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18_vs_db_jaspar_core_nonredundant_vertebrates.tab html_index Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18_vs_db_jaspar_core_nonredundant_vertebrates_index.html alignments_1ton_html Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html match_table_html Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18_vs_db_jaspar_core_nonredundant_vertebrates.html prefix Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18_vs_db_jaspar_core_nonredundant_vertebrates Matrices file1 1 matrices Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m18/peak-motifs_positions_7nt_m18.tf file1 1 16 2764 file2 746 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf file2 1 6 24 file2 2 17 100 file2 3 10 9897 file2 4 17 101 file2 5 17 3851 file2 6 10 25318 file2 7 6 27 file2 8 11 1001 file2 9 14 101 file2 10 6 20 file2 11 8 104 ... 736 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| positions_7nt_m18 | MA0500.2 | positions_7nt_m18positions_7nt_m18 | MYOG | 0.842 | 0.632 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | R | 3 |
| positions_7nt_m18 | MA0832.1 | positions_7nt_m18positions_7nt_m18 | Tcf21 | 0.710 | 0.621 | 16 | 14 | 14 | 16 | 0.8750 | 0.8750 | 1.0000 | R | 2 |
| positions_7nt_m18 | MA0521.1 | positions_7nt_m18positions_7nt_m18 | Tcf12 | 0.844 | 0.580 | 16 | 11 | 11 | 16 | 0.6875 | 0.6875 | 1.0000 | D | 4 |
| positions_7nt_m18 | MA1619.1 | positions_7nt_m18positions_7nt_m18 | Ptf1a(var.2) | 0.762 | 0.571 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 3 |
| positions_7nt_m18 | MA1641.1 | positions_7nt_m18positions_7nt_m18 | MYF5 | 0.748 | 0.561 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | R | 3 |
| positions_7nt_m18 | MA1646.1 | positions_7nt_m18positions_7nt_m18 | OSR2 | 0.736 | 0.552 | 16 | 12 | 12 | 16 | 0.7500 | 0.7500 | 1.0000 | D | 0 |
| positions_7nt_m18 | MA0816.1 | positions_7nt_m18positions_7nt_m18 | Ascl2 | 0.871 | 0.545 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 4 |
| positions_7nt_m18 | MA0048.2 | positions_7nt_m18positions_7nt_m18 | NHLH1 | 0.863 | 0.539 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 4 |
| positions_7nt_m18 | MA1635.1 | positions_7nt_m18positions_7nt_m18 | BHLHE22(var.2) | 0.850 | 0.531 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 4 |
| positions_7nt_m18 | MA1100.2 | positions_7nt_m18positions_7nt_m18 | ASCL1 | 0.840 | 0.525 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 4 |
| positions_7nt_m18 | MA0691.1 | positions_7nt_m18positions_7nt_m18 | TFAP4 | 0.833 | 0.520 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 4 |
| positions_7nt_m18 | MA1472.1 | positions_7nt_m18positions_7nt_m18 | BHLHA15(var.2) | 0.826 | 0.516 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 4 |
| positions_7nt_m18 | MA1648.1 | positions_7nt_m18positions_7nt_m18 | TCF12(var.2) | 0.721 | 0.495 | 16 | 11 | 11 | 16 | 0.6875 | 0.6875 | 1.0000 | R | 3 |
| positions_7nt_m18 | MA1467.1 | positions_7nt_m18positions_7nt_m18 | ATOH1(var.2) | 0.778 | 0.486 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 4 |
| positions_7nt_m18 | MA0522.3 | positions_7nt_m18positions_7nt_m18 | TCF3 | 0.705 | 0.484 | 16 | 11 | 11 | 16 | 0.6875 | 0.6875 | 1.0000 | R | 3 |
| positions_7nt_m18 | MA1628.1 | positions_7nt_m18positions_7nt_m18 | Zic1::Zic2 | 0.700 | 0.481 | 16 | 11 | 11 | 16 | 0.6875 | 0.6875 | 1.0000 | D | 1 |
| positions_7nt_m18 | MA0665.1 | positions_7nt_m18positions_7nt_m18 | MSC | 0.754 | 0.471 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 4 |
| positions_7nt_m18 | MA1542.1 | positions_7nt_m18positions_7nt_m18 | OSR1 | 0.704 | 0.440 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 1 |
Host name pedagogix Job started 2020-04-14.162724 Job done 2020-04-14.162742 Seconds 2.79 user 2.79 system 0.26 cuser 13.29 ; csystem 0.94