Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19.tf
 Output files
	alignments_1ton	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep1_motifs50/results/discovered_motifs/positions_7nt_m19/peak-motifs_positions_7nt_m19.tf
		file1	1	14	5107
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_7nt_m19 MA0499.2 positions_7nt_m19positions_7nt_m19 MYOD1 0.989 0.918 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_7nt_m19 MA0745.2 positions_7nt_m19positions_7nt_m19 SNAI2 0.970 0.901 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_7nt_m19 MA1621.1 positions_7nt_m19positions_7nt_m19 Rbpjl 0.899 0.899 14 14 14 14 1.0000 1.0000 1.0000 D 0
positions_7nt_m19 MA0830.2 positions_7nt_m19positions_7nt_m19 TCF4 0.864 0.803 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_7nt_m19 MA1631.1 positions_7nt_m19positions_7nt_m19 ASCL1(var.2) 0.837 0.777 14 13 13 14 0.9286 0.9286 1.0000 D 1
positions_7nt_m19 MA1620.1 positions_7nt_m19positions_7nt_m19 Ptf1a(var.3) 0.890 0.763 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_7nt_m19 MA1618.1 positions_7nt_m19positions_7nt_m19 Ptf1a 0.736 0.683 14 13 13 14 0.9286 0.9286 1.0000 R 0
positions_7nt_m19 MA1109.1 positions_7nt_m19positions_7nt_m19 NEUROD1 0.727 0.675 14 13 13 14 0.9286 0.9286 1.0000 R 0
positions_7nt_m19 MA0521.1 positions_7nt_m19positions_7nt_m19 Tcf12 0.853 0.670 14 11 11 14 0.7857 0.7857 1.0000 R 1
positions_7nt_m19 MA1559.1 positions_7nt_m19positions_7nt_m19 SNAI3 0.937 0.669 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_7nt_m19 MA0103.3 positions_7nt_m19positions_7nt_m19 ZEB1 0.846 0.665 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_7nt_m19 MA1642.1 positions_7nt_m19positions_7nt_m19 NEUROG2(var.2) 0.714 0.663 14 13 13 14 0.9286 0.9286 1.0000 R 1
positions_7nt_m19 MA1619.1 positions_7nt_m19positions_7nt_m19 Ptf1a(var.2) 0.760 0.652 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_7nt_m19 MA1641.1 positions_7nt_m19positions_7nt_m19 MYF5 0.758 0.650 14 12 12 14 0.8571 0.8571 1.0000 R 1
positions_7nt_m19 MA0783.1 positions_7nt_m19positions_7nt_m19 PKNOX2 0.744 0.637 14 12 12 14 0.8571 0.8571 1.0000 R 1
positions_7nt_m19 MA1558.1 positions_7nt_m19positions_7nt_m19 SNAI1 0.886 0.633 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_7nt_m19 MA0500.2 positions_7nt_m19positions_7nt_m19 MYOG 0.737 0.631 14 12 12 14 0.8571 0.8571 1.0000 D 1
positions_7nt_m19 MA0820.1 positions_7nt_m19positions_7nt_m19 FIGLA 0.859 0.613 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA1648.1 positions_7nt_m19positions_7nt_m19 TCF12(var.2) 0.773 0.608 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_7nt_m19 MA0797.1 positions_7nt_m19positions_7nt_m19 TGIF2 0.705 0.604 14 12 12 14 0.8571 0.8571 1.0000 R 1
positions_7nt_m19 MA0522.3 positions_7nt_m19positions_7nt_m19 TCF3 0.768 0.604 14 11 11 14 0.7857 0.7857 1.0000 D 2
positions_7nt_m19 MA0744.2 positions_7nt_m19positions_7nt_m19 SCRT2 0.777 0.594 14 16 13 17 0.7647 0.9286 0.8125 R 1
positions_7nt_m19 MA0743.2 positions_7nt_m19positions_7nt_m19 SCRT1 0.776 0.594 14 16 13 17 0.7647 0.9286 0.8125 R 1
positions_7nt_m19 MA1100.2 positions_7nt_m19positions_7nt_m19 ASCL1 0.786 0.562 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_7nt_m19 MA0626.1 positions_7nt_m19positions_7nt_m19 Npas2 0.755 0.539 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA1472.1 positions_7nt_m19positions_7nt_m19 BHLHA15(var.2) 0.754 0.539 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA1493.1 positions_7nt_m19positions_7nt_m19 HES6 0.749 0.535 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA1467.1 positions_7nt_m19positions_7nt_m19 ATOH1(var.2) 0.746 0.533 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA1635.1 positions_7nt_m19positions_7nt_m19 BHLHE22(var.2) 0.729 0.521 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_7nt_m19 MA0649.1 positions_7nt_m19positions_7nt_m19 HEY2 0.720 0.514 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_7nt_m19 MA0819.1 positions_7nt_m19positions_7nt_m19 CLOCK 0.720 0.514 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_7nt_m19 MA0823.1 positions_7nt_m19positions_7nt_m19 HEY1 0.717 0.512 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_7nt_m19 MA0100.3 positions_7nt_m19positions_7nt_m19 MYB 0.717 0.512 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA0816.1 positions_7nt_m19positions_7nt_m19 Ascl2 0.716 0.511 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA0667.1 positions_7nt_m19positions_7nt_m19 MYF6 0.708 0.506 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA0665.1 positions_7nt_m19positions_7nt_m19 MSC 0.705 0.503 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m19 MA1638.1 positions_7nt_m19positions_7nt_m19 HAND2 0.704 0.503 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_7nt_m19 MA0774.1 positions_7nt_m19positions_7nt_m19 MEIS2 0.824 0.471 14 8 8 14 0.5714 0.5714 1.0000 R 6
positions_7nt_m19 MA0775.1 positions_7nt_m19positions_7nt_m19 MEIS3 0.811 0.463 14 8 8 14 0.5714 0.5714 1.0000 R 6
positions_7nt_m19 MA0807.1 positions_7nt_m19positions_7nt_m19 TBX5 0.772 0.441 14 8 8 14 0.5714 0.5714 1.0000 R 1
positions_7nt_m19 MA0806.1 positions_7nt_m19positions_7nt_m19 TBX4 0.763 0.436 14 8 8 14 0.5714 0.5714 1.0000 R 1
positions_7nt_m19 MA0622.1 positions_7nt_m19positions_7nt_m19 Mlxip 0.756 0.432 14 8 8 14 0.5714 0.5714 1.0000 D 3
positions_7nt_m19 MA0803.1 positions_7nt_m19positions_7nt_m19 TBX15 0.723 0.413 14 8 8 14 0.5714 0.5714 1.0000 R 1
positions_7nt_m19 MA0498.2 positions_7nt_m19positions_7nt_m19 MEIS1 0.814 0.407 14 7 7 14 0.5000 0.5000 1.0000 R 7
positions_7nt_m19 MA0805.1 positions_7nt_m19positions_7nt_m19 TBX1 0.700 0.400 14 8 8 14 0.5714 0.5714 1.0000 R 1 
 Host name	pedagogix
 Job started	2020-04-14.162744
 Job done	2020-04-14.162842
 Seconds	9.4
	user	9.4
	system	1.12
	cuser	46
;	csystem	2.59